Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 ZBTB45P1-201ENST00000452761 1456 ntBASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 STK33P1-201ENST00000423835 1218 ntBASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 MIR4783-201ENST00000580343 82 ntBASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 MIR4706-201ENST00000582134 82 ntBASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 AL358472.3-201ENST00000608147 415 ntBASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 AL360270.3-201ENST00000609118 1348 ntBASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NPAS3Q8IXF0 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 NPPA-201ENST00000376476 728 ntTSL 3 BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 RN7SKP175-201ENST00000408472 289 ntBASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 MSRA-203ENST00000441698 788 ntTSL 2 BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 TUBB8P8-201ENST00000458717 1058 ntBASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 AC120057.1-201ENST00000483947 663 ntBASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 PARP8-206ENST00000503665 572 ntTSL 4 BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 AC134698.3-201ENST00000523880 214 ntBASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 AL136301.1-201ENST00000615830 422 ntBASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 AL162426.1-201ENST00000624141 743 ntBASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 AC004923.1-202ENST00000642106 209 ntBASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 AC132872.4-202ENST00000622924 2756 ntBASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 AL139384.1-201ENST00000612143 3047 ntBASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NPAS3Q8IXF0 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
NPAS3Q8IXF0 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NPAS3Q8IXF0 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15.66■□□□□ 0.1
NPAS3Q8IXF0 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
NPAS3Q8IXF0 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NPAS3Q8IXF0 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NPAS3Q8IXF0 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
NPAS3Q8IXF0 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
NPAS3Q8IXF0 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
NPAS3Q8IXF0 AC004899.1-201ENST00000424687 1714 ntBASIC15.66■□□□□ 0.1
NPAS3Q8IXF0 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC15.66■□□□□ 0.1
NPAS3Q8IXF0 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
NPAS3Q8IXF0 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
NPAS3Q8IXF0 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
NPAS3Q8IXF0 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC15.66■□□□□ 0.1
NPAS3Q8IXF0 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NPAS3Q8IXF0 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
NPAS3Q8IXF0 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
NPAS3Q8IXF0 AC104073.2-201ENST00000453737 312 ntBASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms