Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SKA3Q8IX90 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC13.56□□□□□ -0.24
SKA3Q8IX90 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SKA3Q8IX90 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC13.56□□□□□ -0.24
SKA3Q8IX90 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
SKA3Q8IX90 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SKA3Q8IX90 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
SKA3Q8IX90 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SKA3Q8IX90 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SKA3Q8IX90 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
SKA3Q8IX90 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC13.56□□□□□ -0.24
SKA3Q8IX90 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SKA3Q8IX90 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC13.56□□□□□ -0.24
SKA3Q8IX90 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC13.56□□□□□ -0.24
SKA3Q8IX90 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SKA3Q8IX90 CALY-202ENST00000368555 783 ntTSL 2 BASIC13.56□□□□□ -0.24
SKA3Q8IX90 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SKA3Q8IX90 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
SKA3Q8IX90 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC13.56□□□□□ -0.24
SKA3Q8IX90 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SKA3Q8IX90 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC13.56□□□□□ -0.24
SKA3Q8IX90 AC098850.1-201ENST00000419919 790 ntBASIC13.56□□□□□ -0.24
SKA3Q8IX90 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC13.56□□□□□ -0.24
SKA3Q8IX90 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC13.56□□□□□ -0.24
SKA3Q8IX90 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC13.56□□□□□ -0.24
SKA3Q8IX90 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SKA3Q8IX90 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC13.56□□□□□ -0.24
SKA3Q8IX90 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC13.56□□□□□ -0.24
SKA3Q8IX90 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC13.56□□□□□ -0.24
SKA3Q8IX90 POLD4-211ENST00000539074 714 ntTSL 3 BASIC13.56□□□□□ -0.24
SKA3Q8IX90 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC13.56□□□□□ -0.24
SKA3Q8IX90 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC13.56□□□□□ -0.24
SKA3Q8IX90 AL049840.4-201ENST00000602422 811 ntBASIC13.56□□□□□ -0.24
SKA3Q8IX90 AC093726.1-201ENST00000608064 963 ntBASIC13.56□□□□□ -0.24
SKA3Q8IX90 AL662799.1-202ENST00000614205 422 ntBASIC13.56□□□□□ -0.24
SKA3Q8IX90 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC13.56□□□□□ -0.24
SKA3Q8IX90 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC13.56□□□□□ -0.24
SKA3Q8IX90 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SKA3Q8IX90 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC13.56□□□□□ -0.24
SKA3Q8IX90 GPR39-203ENST00000622084 900 ntTSL 5 BASIC13.56□□□□□ -0.24
SKA3Q8IX90 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
SKA3Q8IX90 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
SKA3Q8IX90 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SKA3Q8IX90 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SKA3Q8IX90 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SKA3Q8IX90 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC13.56□□□□□ -0.24
SKA3Q8IX90 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SKA3Q8IX90 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SKA3Q8IX90 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SKA3Q8IX90 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SKA3Q8IX90 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
SKA3Q8IX90 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SKA3Q8IX90 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
SKA3Q8IX90 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SKA3Q8IX90 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SKA3Q8IX90 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
SKA3Q8IX90 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SKA3Q8IX90 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SKA3Q8IX90 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SKA3Q8IX90 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SKA3Q8IX90 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
SKA3Q8IX90 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
SKA3Q8IX90 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SKA3Q8IX90 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
SKA3Q8IX90 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SKA3Q8IX90 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SKA3Q8IX90 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
SKA3Q8IX90 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC13.55□□□□□ -0.24
SKA3Q8IX90 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC13.55□□□□□ -0.24
SKA3Q8IX90 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
SKA3Q8IX90 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
SKA3Q8IX90 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
SKA3Q8IX90 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC13.55□□□□□ -0.24
SKA3Q8IX90 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SKA3Q8IX90 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SKA3Q8IX90 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SKA3Q8IX90 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC13.55□□□□□ -0.24
SKA3Q8IX90 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
SKA3Q8IX90 METTL26-204ENST00000397665 558 ntTSL 2 BASIC13.55□□□□□ -0.24
SKA3Q8IX90 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SKA3Q8IX90 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC13.55□□□□□ -0.24
SKA3Q8IX90 MYCLP2-201ENST00000449268 967 ntBASIC13.55□□□□□ -0.24
SKA3Q8IX90 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC13.55□□□□□ -0.24
SKA3Q8IX90 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC13.55□□□□□ -0.24
SKA3Q8IX90 AC190387.1-201ENST00000551683 408 ntBASIC13.55□□□□□ -0.24
SKA3Q8IX90 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC13.55□□□□□ -0.24
SKA3Q8IX90 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC13.55□□□□□ -0.24
SKA3Q8IX90 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC13.55□□□□□ -0.24
SKA3Q8IX90 BRI3BPP1-201ENST00000594224 787 ntBASIC13.55□□□□□ -0.24
SKA3Q8IX90 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC13.55□□□□□ -0.24
SKA3Q8IX90 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC13.55□□□□□ -0.24
SKA3Q8IX90 AL645728.2-202ENST00000641679 227 ntBASIC13.55□□□□□ -0.24
SKA3Q8IX90 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SKA3Q8IX90 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC13.55□□□□□ -0.24
SKA3Q8IX90 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC13.55□□□□□ -0.24
SKA3Q8IX90 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
SKA3Q8IX90 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC13.55□□□□□ -0.24
SKA3Q8IX90 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SKA3Q8IX90 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
SKA3Q8IX90 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms