Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
HOXD4P09016 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD4P09016 ZBTB12BP-201ENST00000314232 1122 ntBASIC13.91□□□□□ -0.18
HOXD4P09016 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC13.91□□□□□ -0.18
HOXD4P09016 APOC3-202ENST00000375345 604 ntTSL 5 BASIC13.91□□□□□ -0.18
HOXD4P09016 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
HOXD4P09016 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
HOXD4P09016 NME6-203ENST00000415644 849 ntTSL 2 BASIC13.91□□□□□ -0.18
HOXD4P09016 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
HOXD4P09016 BCRP2-202ENST00000447763 634 ntBASIC13.91□□□□□ -0.18
HOXD4P09016 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC13.91□□□□□ -0.18
HOXD4P09016 AC007551.1-201ENST00000457394 519 ntBASIC13.91□□□□□ -0.18
HOXD4P09016 AC093433.1-201ENST00000458048 571 ntBASIC13.91□□□□□ -0.18
HOXD4P09016 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD4P09016 AC022137.2-201ENST00000503482 481 ntBASIC13.91□□□□□ -0.18
HOXD4P09016 BCRP6-201ENST00000510112 632 ntBASIC13.91□□□□□ -0.18
HOXD4P09016 BCRP7-201ENST00000511549 544 ntBASIC13.91□□□□□ -0.18
HOXD4P09016 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
HOXD4P09016 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC13.91□□□□□ -0.18
HOXD4P09016 IFT20-206ENST00000578122 834 ntTSL 2 BASIC13.91□□□□□ -0.18
HOXD4P09016 IFT20-208ENST00000578985 831 ntTSL 3 BASIC13.91□□□□□ -0.18
HOXD4P09016 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC13.91□□□□□ -0.18
HOXD4P09016 MIR6869-201ENST00000619434 62 ntBASIC13.91□□□□□ -0.18
HOXD4P09016 SNX12-206ENST00000622259 661 ntTSL 5 BASIC13.91□□□□□ -0.18
HOXD4P09016 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC13.91□□□□□ -0.18
HOXD4P09016 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC13.91□□□□□ -0.18
HOXD4P09016 MARS-233ENST00000628866 2583 ntTSL 5 BASIC13.91□□□□□ -0.18
HOXD4P09016 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD4P09016 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC13.91□□□□□ -0.18
HOXD4P09016 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD4P09016 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC13.91□□□□□ -0.18
HOXD4P09016 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD4P09016 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD4P09016 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC13.91□□□□□ -0.18
HOXD4P09016 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD4P09016 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD4P09016 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD4P09016 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD4P09016 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC13.91□□□□□ -0.18
HOXD4P09016 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD4P09016 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD4P09016 TUBB1P2-201ENST00000422712 1306 ntBASIC13.9□□□□□ -0.18
HOXD4P09016 TUBB1P1-201ENST00000503144 1300 ntBASIC13.9□□□□□ -0.18
HOXD4P09016 AC093525.8-201ENST00000624099 1342 ntBASIC13.9□□□□□ -0.18
HOXD4P09016 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXD4P09016 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC13.9□□□□□ -0.18
HOXD4P09016 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXD4P09016 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
HOXD4P09016 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXD4P09016 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
HOXD4P09016 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HOXD4P09016 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC13.9□□□□□ -0.18
HOXD4P09016 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HOXD4P09016 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC13.9□□□□□ -0.18
HOXD4P09016 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXD4P09016 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXD4P09016 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC13.9□□□□□ -0.18
HOXD4P09016 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXD4P09016 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXD4P09016 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HOXD4P09016 AC092933.1-201ENST00000393644 945 ntBASIC13.9□□□□□ -0.18
HOXD4P09016 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXD4P09016 PGGT1BP2-201ENST00000398621 1028 ntBASIC13.9□□□□□ -0.18
HOXD4P09016 NUS1P3-201ENST00000423502 862 ntBASIC13.9□□□□□ -0.18
HOXD4P09016 FAM21FP-201ENST00000426241 1131 ntBASIC13.9□□□□□ -0.18
HOXD4P09016 C2orf27AP3-201ENST00000434123 579 ntBASIC13.9□□□□□ -0.18
HOXD4P09016 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC13.9□□□□□ -0.18
HOXD4P09016 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC13.9□□□□□ -0.18
HOXD4P09016 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC13.9□□□□□ -0.18
HOXD4P09016 KRT18P25-201ENST00000508931 1278 ntBASIC13.9□□□□□ -0.18
HOXD4P09016 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC13.9□□□□□ -0.18
HOXD4P09016 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC13.9□□□□□ -0.18
HOXD4P09016 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC13.9□□□□□ -0.18
HOXD4P09016 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC13.9□□□□□ -0.18
HOXD4P09016 KSR1-207ENST00000578981 748 ntTSL 4 BASIC13.9□□□□□ -0.18
HOXD4P09016 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC13.9□□□□□ -0.18
HOXD4P09016 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC13.9□□□□□ -0.18
HOXD4P09016 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HOXD4P09016 TECR-220ENST00000600083 1204 ntTSL 2 BASIC13.9□□□□□ -0.18
HOXD4P09016 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC13.9□□□□□ -0.18
HOXD4P09016 AC084346.2-201ENST00000607097 949 ntBASIC13.9□□□□□ -0.18
HOXD4P09016 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC13.9□□□□□ -0.18
HOXD4P09016 AP005019.2-201ENST00000615104 511 ntBASIC13.9□□□□□ -0.18
HOXD4P09016 AL354718.3-201ENST00000616414 581 ntBASIC13.9□□□□□ -0.18
HOXD4P09016 MIR6787-201ENST00000616675 61 ntBASIC13.9□□□□□ -0.18
HOXD4P09016 CR382287.1-201ENST00000623954 586 ntBASIC13.9□□□□□ -0.18
HOXD4P09016 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
HOXD4P09016 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC13.9□□□□□ -0.18
HOXD4P09016 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HOXD4P09016 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
HOXD4P09016 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HOXD4P09016 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
HOXD4P09016 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC13.9□□□□□ -0.18
HOXD4P09016 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
HOXD4P09016 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
HOXD4P09016 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXD4P09016 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXD4P09016 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXD4P09016 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HOXD4P09016 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms