Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AP000322.3-201ENST00000608665 388 ntBASIC11.59□□□□□ -0.55
COL6A5A8TX70 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
COL6A5A8TX70 NCS1-203ENST00000630865 1092 ntTSL 3 BASIC11.59□□□□□ -0.55
COL6A5A8TX70 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
COL6A5A8TX70 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
COL6A5A8TX70 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
COL6A5A8TX70 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
COL6A5A8TX70 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC11.59□□□□□ -0.55
COL6A5A8TX70 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC11.59□□□□□ -0.55
COL6A5A8TX70 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
COL6A5A8TX70 PRMT2-216ENST00000621201 1301 ntTSL 5 BASIC11.59□□□□□ -0.55
COL6A5A8TX70 SUCLA2-205ENST00000470760 1445 ntTSL 2 BASIC11.59□□□□□ -0.55
COL6A5A8TX70 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
COL6A5A8TX70 REXO1L2P-201ENST00000425429 2069 ntBASIC11.59□□□□□ -0.55
COL6A5A8TX70 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
COL6A5A8TX70 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
COL6A5A8TX70 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC11.59□□□□□ -0.55
COL6A5A8TX70 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
COL6A5A8TX70 Z82185.1-201ENST00000417792 549 ntTSL 4 BASIC11.58□□□□□ -0.55
COL6A5A8TX70 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC11.58□□□□□ -0.55
COL6A5A8TX70 RPS18P9-201ENST00000482817 460 ntBASIC11.58□□□□□ -0.55
COL6A5A8TX70 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC11.58□□□□□ -0.55
COL6A5A8TX70 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC11.58□□□□□ -0.55
COL6A5A8TX70 AC010632.2-201ENST00000588369 1224 ntBASIC11.58□□□□□ -0.55
COL6A5A8TX70 AC006116.2-201ENST00000589958 988 ntBASIC11.58□□□□□ -0.55
COL6A5A8TX70 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.55
COL6A5A8TX70 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC11.58□□□□□ -0.55
COL6A5A8TX70 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC11.58□□□□□ -0.55
COL6A5A8TX70 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
COL6A5A8TX70 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC11.58□□□□□ -0.56
COL6A5A8TX70 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
COL6A5A8TX70 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
COL6A5A8TX70 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
COL6A5A8TX70 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC11.58□□□□□ -0.56
COL6A5A8TX70 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
COL6A5A8TX70 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
COL6A5A8TX70 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
COL6A5A8TX70 AL139384.1-201ENST00000612143 3047 ntBASIC11.58□□□□□ -0.56
COL6A5A8TX70 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
COL6A5A8TX70 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
COL6A5A8TX70 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC11.58□□□□□ -0.56
COL6A5A8TX70 AL157414.3-201ENST00000624276 1954 ntBASIC11.58□□□□□ -0.56
COL6A5A8TX70 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
COL6A5A8TX70 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC11.58□□□□□ -0.56
COL6A5A8TX70 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC11.58□□□□□ -0.56
COL6A5A8TX70 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC11.58□□□□□ -0.56
COL6A5A8TX70 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC11.58□□□□□ -0.56
COL6A5A8TX70 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC11.58□□□□□ -0.56
COL6A5A8TX70 KNOP1P1-201ENST00000542108 989 ntBASIC11.58□□□□□ -0.56
COL6A5A8TX70 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC11.58□□□□□ -0.56
COL6A5A8TX70 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
COL6A5A8TX70 AC138696.2-201ENST00000607376 223 ntBASIC11.58□□□□□ -0.56
COL6A5A8TX70 CBR3-AS1-206ENST00000608632 659 ntTSL 5 BASIC11.58□□□□□ -0.56
COL6A5A8TX70 AC020922.4-201ENST00000621389 339 ntBASIC11.58□□□□□ -0.56
COL6A5A8TX70 MIEF1-215ENST00000637854 213 ntBASIC11.58□□□□□ -0.56
COL6A5A8TX70 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC11.58□□□□□ -0.56
COL6A5A8TX70 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC11.58□□□□□ -0.56
COL6A5A8TX70 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
COL6A5A8TX70 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC11.58□□□□□ -0.56
COL6A5A8TX70 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
COL6A5A8TX70 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC11.58□□□□□ -0.56
COL6A5A8TX70 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC11.58□□□□□ -0.56
COL6A5A8TX70 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
COL6A5A8TX70 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
COL6A5A8TX70 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
COL6A5A8TX70 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
COL6A5A8TX70 HLA-K-203ENST00000430151 1046 ntBASIC11.57□□□□□ -0.56
COL6A5A8TX70 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC11.57□□□□□ -0.56
COL6A5A8TX70 CSNK1G2P1-201ENST00000442675 955 ntBASIC11.57□□□□□ -0.56
COL6A5A8TX70 PPIA-208ENST00000489459 907 ntTSL 2 BASIC11.57□□□□□ -0.56
COL6A5A8TX70 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC11.57□□□□□ -0.56
COL6A5A8TX70 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
COL6A5A8TX70 PPIA-210ENST00000620047 827 ntTSL 5 BASIC11.57□□□□□ -0.56
COL6A5A8TX70 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
COL6A5A8TX70 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC11.57□□□□□ -0.56
COL6A5A8TX70 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
COL6A5A8TX70 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
COL6A5A8TX70 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
COL6A5A8TX70 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
COL6A5A8TX70 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
COL6A5A8TX70 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
COL6A5A8TX70 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
COL6A5A8TX70 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
COL6A5A8TX70 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC11.57□□□□□ -0.56
COL6A5A8TX70 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
COL6A5A8TX70 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
COL6A5A8TX70 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC11.57□□□□□ -0.56
COL6A5A8TX70 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
COL6A5A8TX70 API5-208ENST00000531273 1868 ntTSL 2 BASIC11.57□□□□□ -0.56
COL6A5A8TX70 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
COL6A5A8TX70 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
COL6A5A8TX70 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC11.57□□□□□ -0.56
COL6A5A8TX70 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC11.57□□□□□ -0.56
COL6A5A8TX70 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC11.57□□□□□ -0.56
COL6A5A8TX70 LY6E-215ENST00000523847 427 ntTSL 3 BASIC11.57□□□□□ -0.56
COL6A5A8TX70 AL513165.2-203ENST00000537239 717 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
COL6A5A8TX70 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC11.57□□□□□ -0.56
COL6A5A8TX70 AC007952.4-201ENST00000573866 637 ntBASIC11.57□□□□□ -0.56
COL6A5A8TX70 AC021321.1-201ENST00000607397 1113 ntBASIC11.57□□□□□ -0.56
COL6A5A8TX70 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC11.57□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms