Protein–RNA interactions for Protein: Q8BTF7

Lig4, DNA ligase 4, mousemouse

Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig4Q8BTF7 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Lig4Q8BTF7 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
Lig4Q8BTF7 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Lig4Q8BTF7 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Lig4Q8BTF7 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Lig4Q8BTF7 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Lig4Q8BTF7 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Lig4Q8BTF7 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Lig4Q8BTF7 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Lig4Q8BTF7 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Lig4Q8BTF7 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Lig4Q8BTF7 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
Lig4Q8BTF7 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
Lig4Q8BTF7 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC22.01■■□□□ 1.11
Lig4Q8BTF7 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Lig4Q8BTF7 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Lig4Q8BTF7 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC22.01■■□□□ 1.11
Lig4Q8BTF7 Gm4430-201ENSMUST00000192413 1943 ntBASIC22.01■■□□□ 1.11
Lig4Q8BTF7 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Lig4Q8BTF7 AC164883.3-201ENSMUST00000227396 1774 ntBASIC22.01■■□□□ 1.11
Lig4Q8BTF7 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Lig4Q8BTF7 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Lig4Q8BTF7 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
Lig4Q8BTF7 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC22■■□□□ 1.11
Lig4Q8BTF7 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC22■■□□□ 1.11
Lig4Q8BTF7 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC22■■□□□ 1.11
Lig4Q8BTF7 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Lig4Q8BTF7 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
Lig4Q8BTF7 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Lig4Q8BTF7 Gm37415-201ENSMUST00000192265 2054 ntBASIC21.99■■□□□ 1.11
Lig4Q8BTF7 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
Lig4Q8BTF7 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC21.99■■□□□ 1.11
Lig4Q8BTF7 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC21.99■■□□□ 1.11
Lig4Q8BTF7 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Lig4Q8BTF7 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
Lig4Q8BTF7 Kdm3b-204ENSMUST00000224715 2032 ntBASIC21.98■■□□□ 1.11
Lig4Q8BTF7 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
Lig4Q8BTF7 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC21.97■■□□□ 1.11
Lig4Q8BTF7 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC21.97■■□□□ 1.11
Lig4Q8BTF7 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
Lig4Q8BTF7 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Lig4Q8BTF7 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Lig4Q8BTF7 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Lig4Q8BTF7 Gm26766-202ENSMUST00000227544 2347 ntBASIC21.96■■□□□ 1.11
Lig4Q8BTF7 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Lig4Q8BTF7 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Lig4Q8BTF7 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Lig4Q8BTF7 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC21.96■■□□□ 1.11
Lig4Q8BTF7 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Lig4Q8BTF7 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Lig4Q8BTF7 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Lig4Q8BTF7 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Lig4Q8BTF7 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Lig4Q8BTF7 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Lig4Q8BTF7 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC21.95■■□□□ 1.1
Lig4Q8BTF7 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Lig4Q8BTF7 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Lig4Q8BTF7 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC21.94■■□□□ 1.1
Lig4Q8BTF7 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Lig4Q8BTF7 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Lig4Q8BTF7 Gm9847-201ENSMUST00000052528 599 ntBASIC21.94■■□□□ 1.1
Lig4Q8BTF7 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Lig4Q8BTF7 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC21.93■■□□□ 1.1
Lig4Q8BTF7 AC124392.1-201ENSMUST00000225172 5324 ntBASIC21.93■■□□□ 1.1
Lig4Q8BTF7 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Lig4Q8BTF7 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Lig4Q8BTF7 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
Lig4Q8BTF7 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC21.92■■□□□ 1.1
Lig4Q8BTF7 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
Lig4Q8BTF7 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Lig4Q8BTF7 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Lig4Q8BTF7 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Lig4Q8BTF7 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
Lig4Q8BTF7 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
Lig4Q8BTF7 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
Lig4Q8BTF7 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Lig4Q8BTF7 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC21.92■■□□□ 1.1
Lig4Q8BTF7 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Lig4Q8BTF7 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Lig4Q8BTF7 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Lig4Q8BTF7 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Lig4Q8BTF7 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Lig4Q8BTF7 Gm12922-201ENSMUST00000120626 809 ntBASIC21.91■■□□□ 1.1
Lig4Q8BTF7 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC21.91■■□□□ 1.1
Lig4Q8BTF7 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
Lig4Q8BTF7 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Lig4Q8BTF7 Gm43403-201ENSMUST00000198011 1786 ntBASIC21.91■■□□□ 1.1
Lig4Q8BTF7 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
Lig4Q8BTF7 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
Lig4Q8BTF7 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
Lig4Q8BTF7 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Lig4Q8BTF7 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Lig4Q8BTF7 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC21.9■■□□□ 1.1
Lig4Q8BTF7 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC21.89■■□□□ 1.1
Lig4Q8BTF7 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Lig4Q8BTF7 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
Lig4Q8BTF7 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Lig4Q8BTF7 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.1
Lig4Q8BTF7 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
Lig4Q8BTF7 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms