Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC40.74■■■■■ 4.11
CCDC88BA6NC98 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC40.74■■■■■ 4.11
CCDC88BA6NC98 AC005703.6-201ENST00000623265 1329 ntBASIC40.74■■■■■ 4.11
CCDC88BA6NC98 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC40.74■■■■■ 4.11
CCDC88BA6NC98 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC40.73■■■■■ 4.11
CCDC88BA6NC98 MIR4767-201ENST00000582827 78 ntBASIC40.73■■■■■ 4.11
CCDC88BA6NC98 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC40.73■■■■■ 4.11
CCDC88BA6NC98 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC40.72■■■■■ 4.11
CCDC88BA6NC98 AC104564.3-201ENST00000582367 638 ntBASIC40.72■■■■■ 4.11
CCDC88BA6NC98 MIR5787-201ENST00000611784 55 ntBASIC40.72■■■■■ 4.11
CCDC88BA6NC98 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC40.72■■■■■ 4.11
CCDC88BA6NC98 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC40.72■■■■■ 4.11
CCDC88BA6NC98 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC40.71■■■■■ 4.11
CCDC88BA6NC98 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC40.71■■■■■ 4.11
CCDC88BA6NC98 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC40.71■■■■■ 4.11
CCDC88BA6NC98 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC40.7■■■■■ 4.11
CCDC88BA6NC98 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC40.7■■■■■ 4.11
CCDC88BA6NC98 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC40.7■■■■■ 4.11
CCDC88BA6NC98 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC40.7■■■■■ 4.11
CCDC88BA6NC98 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC40.7■■■■■ 4.11
CCDC88BA6NC98 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC40.7■■■■■ 4.11
CCDC88BA6NC98 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC40.69■■■■■ 4.1
CCDC88BA6NC98 PTMA-205ENST00000410064 814 ntTSL 2 BASIC40.69■■■■■ 4.1
CCDC88BA6NC98 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC40.68■■■■■ 4.1
CCDC88BA6NC98 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC40.68■■■■■ 4.1
CCDC88BA6NC98 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC40.68■■■■■ 4.1
CCDC88BA6NC98 SERBP1P1-201ENST00000396021 1160 ntBASIC40.68■■■■■ 4.1
CCDC88BA6NC98 DUX4L19-201ENST00000557448 1267 ntBASIC40.68■■■■■ 4.1
CCDC88BA6NC98 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC40.68■■■■■ 4.1
CCDC88BA6NC98 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC40.68■■■■■ 4.1
CCDC88BA6NC98 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC40.68■■■■■ 4.1
CCDC88BA6NC98 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC40.67■■■■■ 4.1
CCDC88BA6NC98 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC40.67■■■■■ 4.1
CCDC88BA6NC98 STOX2-205ENST00000513034 807 ntTSL 3 BASIC40.67■■■■■ 4.1
CCDC88BA6NC98 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC40.67■■■■■ 4.1
CCDC88BA6NC98 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC40.66■■■■■ 4.1
CCDC88BA6NC98 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC40.66■■■■■ 4.1
CCDC88BA6NC98 AC091305.1-201ENST00000479476 895 ntBASIC40.66■■■■■ 4.1
CCDC88BA6NC98 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC40.66■■■■■ 4.1
CCDC88BA6NC98 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC40.66■■■■■ 4.1
CCDC88BA6NC98 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC40.65■■■■■ 4.1
CCDC88BA6NC98 MAG-206ENST00000597035 542 ntTSL 4 BASIC40.65■■■■■ 4.1
CCDC88BA6NC98 MIR6821-201ENST00000617625 74 ntBASIC40.65■■■■■ 4.1
CCDC88BA6NC98 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC40.64■■■■■ 4.1
CCDC88BA6NC98 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC40.64■■■■■ 4.1
CCDC88BA6NC98 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC40.64■■■■■ 4.1
CCDC88BA6NC98 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC40.64■■■■■ 4.1
CCDC88BA6NC98 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC40.64■■■■■ 4.1
CCDC88BA6NC98 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC40.64■■■■■ 4.1
CCDC88BA6NC98 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC40.64■■■■■ 4.1
CCDC88BA6NC98 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC40.63■■■■■ 4.1
CCDC88BA6NC98 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC40.63■■■■■ 4.09
CCDC88BA6NC98 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC40.63■■■■■ 4.09
CCDC88BA6NC98 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC40.63■■■■■ 4.09
CCDC88BA6NC98 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC40.63■■■■■ 4.09
CCDC88BA6NC98 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC40.63■■■■■ 4.09
CCDC88BA6NC98 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC40.62■■■■■ 4.09
CCDC88BA6NC98 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC40.62■■■■■ 4.09
CCDC88BA6NC98 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC40.62■■■■■ 4.09
CCDC88BA6NC98 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC40.62■■■■■ 4.09
CCDC88BA6NC98 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC40.61■■■■■ 4.09
CCDC88BA6NC98 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC40.61■■■■■ 4.09
CCDC88BA6NC98 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC40.61■■■■■ 4.09
CCDC88BA6NC98 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC40.61■■■■■ 4.09
CCDC88BA6NC98 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC40.61■■■■■ 4.09
CCDC88BA6NC98 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC40.6■■■■■ 4.09
CCDC88BA6NC98 PTCHD3P2-201ENST00000424937 1205 ntBASIC40.6■■■■■ 4.09
CCDC88BA6NC98 RBM38-205ENST00000440234 686 ntTSL 2 BASIC40.6■■■■■ 4.09
CCDC88BA6NC98 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC40.6■■■■■ 4.09
CCDC88BA6NC98 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC40.6■■■■■ 4.09
CCDC88BA6NC98 ANKRD20A6P-201ENST00000618763 204 ntBASIC40.6■■■■■ 4.09
CCDC88BA6NC98 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC40.6■■■■■ 4.09
CCDC88BA6NC98 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC40.6■■■■■ 4.09
CCDC88BA6NC98 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC40.59■■■■■ 4.09
CCDC88BA6NC98 CA15P2-201ENST00000611168 834 ntBASIC40.59■■■■■ 4.09
CCDC88BA6NC98 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC40.59■■■■■ 4.09
CCDC88BA6NC98 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC40.59■■■■■ 4.09
CCDC88BA6NC98 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC40.59■■■■■ 4.09
CCDC88BA6NC98 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC40.59■■■■■ 4.09
CCDC88BA6NC98 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC40.59■■■■■ 4.09
CCDC88BA6NC98 SYT6-210ENST00000641643 1587 ntBASIC40.59■■■■■ 4.09
CCDC88BA6NC98 AC097381.1-201ENST00000429019 1296 ntBASIC40.58■■■■■ 4.09
CCDC88BA6NC98 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC40.58■■■■■ 4.09
CCDC88BA6NC98 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC40.58■■■■■ 4.09
CCDC88BA6NC98 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC40.57■■■■■ 4.09
CCDC88BA6NC98 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC40.57■■■■■ 4.09
CCDC88BA6NC98 REST-206ENST00000612429 1376 ntTSL 5 BASIC40.57■■■■■ 4.09
CCDC88BA6NC98 REST-207ENST00000616975 1370 ntTSL 5 BASIC40.57■■■■■ 4.09
CCDC88BA6NC98 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC40.57■■■■■ 4.09
CCDC88BA6NC98 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC40.57■■■■■ 4.08
CCDC88BA6NC98 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC40.57■■■■■ 4.08
CCDC88BA6NC98 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC40.57■■■■■ 4.08
CCDC88BA6NC98 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC40.57■■■■■ 4.08
CCDC88BA6NC98 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC40.56■■■■■ 4.08
CCDC88BA6NC98 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC40.56■■■■■ 4.08
CCDC88BA6NC98 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC40.55■■■■■ 4.08
CCDC88BA6NC98 AC087623.3-201ENST00000607047 1098 ntBASIC40.55■■■■■ 4.08
CCDC88BA6NC98 AC011298.3-201ENST00000615796 283 ntBASIC40.55■■■■■ 4.08
CCDC88BA6NC98 MIR6089-201ENST00000616698 64 ntBASIC40.55■■■■■ 4.08
CCDC88BA6NC98 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC40.55■■■■■ 4.08
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms