Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Trav11A0A0B4J1J9 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trav11A0A0B4J1J9 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trav11A0A0B4J1J9 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trav11A0A0B4J1J9 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Trav11A0A0B4J1J9 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trav11A0A0B4J1J9 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Trav11A0A0B4J1J9 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trav11A0A0B4J1J9 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trav11A0A0B4J1J9 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trav11A0A0B4J1J9 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trav11A0A0B4J1J9 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trav11A0A0B4J1J9 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trav11A0A0B4J1J9 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trav11A0A0B4J1J9 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
Trav11A0A0B4J1J9 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC14.2□□□□□ -0.14
Trav11A0A0B4J1J9 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC14.2□□□□□ -0.14
Trav11A0A0B4J1J9 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC14.2□□□□□ -0.14
Trav11A0A0B4J1J9 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav11A0A0B4J1J9 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav11A0A0B4J1J9 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav11A0A0B4J1J9 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav11A0A0B4J1J9 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC14.2□□□□□ -0.14
Trav11A0A0B4J1J9 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trav11A0A0B4J1J9 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav11A0A0B4J1J9 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trav11A0A0B4J1J9 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav11A0A0B4J1J9 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trav11A0A0B4J1J9 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav11A0A0B4J1J9 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Trav11A0A0B4J1J9 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC14.19□□□□□ -0.14
Trav11A0A0B4J1J9 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC14.19□□□□□ -0.14
Trav11A0A0B4J1J9 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav11A0A0B4J1J9 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav11A0A0B4J1J9 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav11A0A0B4J1J9 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav11A0A0B4J1J9 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav11A0A0B4J1J9 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC14.18□□□□□ -0.14
Trav11A0A0B4J1J9 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC14.18□□□□□ -0.14
Trav11A0A0B4J1J9 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav11A0A0B4J1J9 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Trav11A0A0B4J1J9 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav11A0A0B4J1J9 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav11A0A0B4J1J9 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav11A0A0B4J1J9 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav11A0A0B4J1J9 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trav11A0A0B4J1J9 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav11A0A0B4J1J9 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Trav11A0A0B4J1J9 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Trav11A0A0B4J1J9 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav11A0A0B4J1J9 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav11A0A0B4J1J9 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trav11A0A0B4J1J9 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav11A0A0B4J1J9 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav11A0A0B4J1J9 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Trav11A0A0B4J1J9 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav11A0A0B4J1J9 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav11A0A0B4J1J9 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav11A0A0B4J1J9 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav11A0A0B4J1J9 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trav11A0A0B4J1J9 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
Trav11A0A0B4J1J9 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Trav11A0A0B4J1J9 Gm6311-201ENSMUST00000073790 878 ntBASIC14.17□□□□□ -0.14
Trav11A0A0B4J1J9 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Trav11A0A0B4J1J9 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trav11A0A0B4J1J9 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav11A0A0B4J1J9 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav11A0A0B4J1J9 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav11A0A0B4J1J9 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav11A0A0B4J1J9 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav11A0A0B4J1J9 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav11A0A0B4J1J9 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC14.16□□□□□ -0.14
Trav11A0A0B4J1J9 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC14.16□□□□□ -0.14
Trav11A0A0B4J1J9 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trav11A0A0B4J1J9 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav11A0A0B4J1J9 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav11A0A0B4J1J9 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trav11A0A0B4J1J9 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Trav11A0A0B4J1J9 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Trav11A0A0B4J1J9 AC164883.3-201ENSMUST00000227396 1774 ntBASIC14.16□□□□□ -0.14
Trav11A0A0B4J1J9 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav11A0A0B4J1J9 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trav11A0A0B4J1J9 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav11A0A0B4J1J9 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav11A0A0B4J1J9 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC14.15□□□□□ -0.14
Trav11A0A0B4J1J9 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav11A0A0B4J1J9 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Trav11A0A0B4J1J9 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav11A0A0B4J1J9 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav11A0A0B4J1J9 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trav11A0A0B4J1J9 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav11A0A0B4J1J9 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav11A0A0B4J1J9 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav11A0A0B4J1J9 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav11A0A0B4J1J9 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav11A0A0B4J1J9 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC14.14□□□□□ -0.15
Trav11A0A0B4J1J9 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trav11A0A0B4J1J9 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trav11A0A0B4J1J9 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trav11A0A0B4J1J9 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms