Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AC148477.4-201ENST00000613430 1793 ntBASIC19.33■□□□□ 0.68
NPHP1O15259 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
NPHP1O15259 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC19.33■□□□□ 0.68
NPHP1O15259 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC19.33■□□□□ 0.68
NPHP1O15259 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
NPHP1O15259 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
NPHP1O15259 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC19.33■□□□□ 0.68
NPHP1O15259 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
NPHP1O15259 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
NPHP1O15259 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
NPHP1O15259 AGGF1P2-201ENST00000426656 2106 ntBASIC19.33■□□□□ 0.68
NPHP1O15259 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
NPHP1O15259 AC132872.4-202ENST00000622924 2756 ntBASIC19.32■□□□□ 0.68
NPHP1O15259 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
NPHP1O15259 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
NPHP1O15259 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
NPHP1O15259 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC19.32■□□□□ 0.68
NPHP1O15259 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
NPHP1O15259 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
NPHP1O15259 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC19.32■□□□□ 0.68
NPHP1O15259 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
NPHP1O15259 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
NPHP1O15259 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
NPHP1O15259 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
NPHP1O15259 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC19.32■□□□□ 0.68
NPHP1O15259 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
NPHP1O15259 RPS15-201ENST00000233609 534 ntTSL 2 BASIC19.32■□□□□ 0.68
NPHP1O15259 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
NPHP1O15259 SNX21-203ENST00000372541 771 ntTSL 2 BASIC19.32■□□□□ 0.68
NPHP1O15259 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
NPHP1O15259 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
NPHP1O15259 POM121L10P-201ENST00000436994 1285 ntBASIC19.32■□□□□ 0.68
NPHP1O15259 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC19.32■□□□□ 0.68
NPHP1O15259 EIF4HP1-201ENST00000453115 687 ntBASIC19.32■□□□□ 0.68
NPHP1O15259 BX284668.4-201ENST00000453917 508 ntBASIC19.32■□□□□ 0.68
NPHP1O15259 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC19.32■□□□□ 0.68
NPHP1O15259 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
NPHP1O15259 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC19.32■□□□□ 0.68
NPHP1O15259 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC19.32■□□□□ 0.68
NPHP1O15259 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC19.32■□□□□ 0.68
NPHP1O15259 RPS15-205ENST00000586686 562 ntTSL 5 BASIC19.32■□□□□ 0.68
NPHP1O15259 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC19.32■□□□□ 0.68
NPHP1O15259 RPS15-208ENST00000591804 711 ntTSL 5 BASIC19.32■□□□□ 0.68
NPHP1O15259 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
NPHP1O15259 NDUFV2P1-201ENST00000596415 907 ntBASIC19.32■□□□□ 0.68
NPHP1O15259 AL451050.2-201ENST00000606967 682 ntBASIC19.32■□□□□ 0.68
NPHP1O15259 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
NPHP1O15259 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC19.32■□□□□ 0.68
NPHP1O15259 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC19.32■□□□□ 0.68
NPHP1O15259 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
NPHP1O15259 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
NPHP1O15259 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC19.32■□□□□ 0.68
NPHP1O15259 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
NPHP1O15259 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
NPHP1O15259 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
NPHP1O15259 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
NPHP1O15259 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC19.32■□□□□ 0.68
NPHP1O15259 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC19.32■□□□□ 0.68
NPHP1O15259 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
NPHP1O15259 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
NPHP1O15259 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC19.31■□□□□ 0.68
NPHP1O15259 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC19.31■□□□□ 0.68
NPHP1O15259 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
NPHP1O15259 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
NPHP1O15259 NORAD-201ENST00000565493 5339 ntBASIC19.31■□□□□ 0.68
NPHP1O15259 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
NPHP1O15259 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
NPHP1O15259 MIR663B-201ENST00000408361 115 ntBASIC19.31■□□□□ 0.68
NPHP1O15259 AC079178.1-201ENST00000420915 656 ntBASIC19.31■□□□□ 0.68
NPHP1O15259 FAM8A4P-201ENST00000435433 1213 ntBASIC19.31■□□□□ 0.68
NPHP1O15259 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC19.31■□□□□ 0.68
NPHP1O15259 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC19.31■□□□□ 0.68
NPHP1O15259 PARP8-206ENST00000503665 572 ntTSL 4 BASIC19.31■□□□□ 0.68
NPHP1O15259 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC19.31■□□□□ 0.68
NPHP1O15259 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
NPHP1O15259 ENPP7P14-201ENST00000621765 1040 ntBASIC19.31■□□□□ 0.68
NPHP1O15259 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC19.31■□□□□ 0.68
NPHP1O15259 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC19.31■□□□□ 0.68
NPHP1O15259 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
NPHP1O15259 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
NPHP1O15259 AC092364.2-201ENST00000596710 2692 ntBASIC19.31■□□□□ 0.68
NPHP1O15259 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
NPHP1O15259 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
NPHP1O15259 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
NPHP1O15259 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
NPHP1O15259 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
NPHP1O15259 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC19.31■□□□□ 0.68
NPHP1O15259 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
NPHP1O15259 AL023775.1-201ENST00000454907 1746 ntBASIC19.31■□□□□ 0.68
NPHP1O15259 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
NPHP1O15259 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
NPHP1O15259 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
NPHP1O15259 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
NPHP1O15259 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
NPHP1O15259 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
NPHP1O15259 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
NPHP1O15259 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NPHP1O15259 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
NPHP1O15259 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NPHP1O15259 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms