Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ERCC3P19447 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ERCC3P19447 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ERCC3P19447 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ERCC3P19447 GOLGA2P4-201ENST00000441462 777 ntBASIC17.79■□□□□ 0.44
ERCC3P19447 PFN2-215ENST00000497148 743 ntTSL 4 BASIC17.79■□□□□ 0.44
ERCC3P19447 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ERCC3P19447 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC17.79■□□□□ 0.44
ERCC3P19447 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC17.79■□□□□ 0.44
ERCC3P19447 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ERCC3P19447 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC17.79■□□□□ 0.44
ERCC3P19447 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ERCC3P19447 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC17.79■□□□□ 0.44
ERCC3P19447 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC17.79■□□□□ 0.44
ERCC3P19447 AL118558.3-201ENST00000607414 1079 ntBASIC17.79■□□□□ 0.44
ERCC3P19447 BX539320.1-201ENST00000623759 877 ntBASIC17.79■□□□□ 0.44
ERCC3P19447 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC17.79■□□□□ 0.44
ERCC3P19447 ABBA01031663.1-201ENST00000635630 790 ntBASIC17.79■□□□□ 0.44
ERCC3P19447 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ERCC3P19447 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ERCC3P19447 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
ERCC3P19447 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC17.79■□□□□ 0.44
ERCC3P19447 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ERCC3P19447 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ERCC3P19447 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ERCC3P19447 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
ERCC3P19447 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ERCC3P19447 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ERCC3P19447 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC17.79■□□□□ 0.44
ERCC3P19447 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC17.79■□□□□ 0.44
ERCC3P19447 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
ERCC3P19447 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
ERCC3P19447 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ERCC3P19447 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ERCC3P19447 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ERCC3P19447 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC17.78■□□□□ 0.44
ERCC3P19447 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
ERCC3P19447 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
ERCC3P19447 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
ERCC3P19447 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ERCC3P19447 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ERCC3P19447 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC17.78■□□□□ 0.44
ERCC3P19447 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ERCC3P19447 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ERCC3P19447 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ERCC3P19447 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
ERCC3P19447 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ERCC3P19447 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ERCC3P19447 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ERCC3P19447 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
ERCC3P19447 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC17.78■□□□□ 0.44
ERCC3P19447 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
ERCC3P19447 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC17.78■□□□□ 0.44
ERCC3P19447 IGHV3OR16-16-201ENST00000563644 343 ntBASIC17.78■□□□□ 0.44
ERCC3P19447 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC17.78■□□□□ 0.44
ERCC3P19447 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC17.78■□□□□ 0.44
ERCC3P19447 HNRNPA1P48-202ENST00000565308 961 ntBASIC17.78■□□□□ 0.44
ERCC3P19447 TBCB-211ENST00000589996 724 ntTSL 3 BASIC17.78■□□□□ 0.44
ERCC3P19447 AC132938.4-201ENST00000623835 848 ntBASIC17.78■□□□□ 0.44
ERCC3P19447 AL139099.5-201ENST00000635274 300 ntBASIC17.78■□□□□ 0.44
ERCC3P19447 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
ERCC3P19447 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC17.78■□□□□ 0.44
ERCC3P19447 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ERCC3P19447 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
ERCC3P19447 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC17.78■□□□□ 0.44
ERCC3P19447 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ERCC3P19447 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC17.78■□□□□ 0.44
ERCC3P19447 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ERCC3P19447 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
ERCC3P19447 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ERCC3P19447 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ERCC3P19447 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
ERCC3P19447 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
ERCC3P19447 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC17.78■□□□□ 0.44
ERCC3P19447 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ERCC3P19447 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC17.78■□□□□ 0.44
ERCC3P19447 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC17.77■□□□□ 0.44
ERCC3P19447 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
ERCC3P19447 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC17.77■□□□□ 0.44
ERCC3P19447 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ERCC3P19447 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
ERCC3P19447 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
ERCC3P19447 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
ERCC3P19447 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
ERCC3P19447 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
ERCC3P19447 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
ERCC3P19447 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ERCC3P19447 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC17.77■□□□□ 0.44
ERCC3P19447 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC17.77■□□□□ 0.44
ERCC3P19447 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
ERCC3P19447 AC006033.1-201ENST00000440505 426 ntBASIC17.77■□□□□ 0.44
ERCC3P19447 AL590640.2-201ENST00000457038 527 ntBASIC17.77■□□□□ 0.44
ERCC3P19447 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC17.77■□□□□ 0.44
ERCC3P19447 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC17.77■□□□□ 0.44
ERCC3P19447 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC17.77■□□□□ 0.44
ERCC3P19447 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC17.77■□□□□ 0.44
ERCC3P19447 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC17.77■□□□□ 0.44
ERCC3P19447 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC17.77■□□□□ 0.44
ERCC3P19447 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC17.77■□□□□ 0.44
ERCC3P19447 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms