Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC19.38■□□□□ 0.69
NPHP1O15259 AL662890.1-201ENST00000396818 632 ntBASIC19.38■□□□□ 0.69
NPHP1O15259 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
NPHP1O15259 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC19.38■□□□□ 0.69
NPHP1O15259 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC19.38■□□□□ 0.69
NPHP1O15259 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC19.38■□□□□ 0.69
NPHP1O15259 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC19.38■□□□□ 0.69
NPHP1O15259 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC19.38■□□□□ 0.69
NPHP1O15259 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC19.38■□□□□ 0.69
NPHP1O15259 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC19.38■□□□□ 0.69
NPHP1O15259 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
NPHP1O15259 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC19.38■□□□□ 0.69
NPHP1O15259 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC19.38■□□□□ 0.69
NPHP1O15259 AMT-233ENST00000636522 1620 ntTSL 2 BASIC19.38■□□□□ 0.69
NPHP1O15259 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC19.38■□□□□ 0.69
NPHP1O15259 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
NPHP1O15259 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
NPHP1O15259 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NPHP1O15259 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
NPHP1O15259 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
NPHP1O15259 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NPHP1O15259 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NPHP1O15259 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
NPHP1O15259 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NPHP1O15259 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NPHP1O15259 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NPHP1O15259 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
NPHP1O15259 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NPHP1O15259 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
NPHP1O15259 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NPHP1O15259 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC19.37■□□□□ 0.69
NPHP1O15259 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC19.37■□□□□ 0.69
NPHP1O15259 CSH2-202ENST00000345366 598 ntTSL 5 BASIC19.37■□□□□ 0.69
NPHP1O15259 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
NPHP1O15259 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC19.37■□□□□ 0.69
NPHP1O15259 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC19.37■□□□□ 0.69
NPHP1O15259 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC19.37■□□□□ 0.69
NPHP1O15259 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC19.37■□□□□ 0.69
NPHP1O15259 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC19.37■□□□□ 0.69
NPHP1O15259 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC19.37■□□□□ 0.69
NPHP1O15259 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC19.37■□□□□ 0.69
NPHP1O15259 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC19.37■□□□□ 0.69
NPHP1O15259 APOA2-204ENST00000464492 530 ntTSL 3 BASIC19.37■□□□□ 0.69
NPHP1O15259 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
NPHP1O15259 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC19.37■□□□□ 0.69
NPHP1O15259 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC19.37■□□□□ 0.69
NPHP1O15259 ADM-202ENST00000524948 584 ntTSL 2 BASIC19.37■□□□□ 0.69
NPHP1O15259 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
NPHP1O15259 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NPHP1O15259 RERG-205ENST00000537647 935 ntTSL 2 BASIC19.37■□□□□ 0.69
NPHP1O15259 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC19.37■□□□□ 0.69
NPHP1O15259 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
NPHP1O15259 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NPHP1O15259 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NPHP1O15259 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC19.37■□□□□ 0.69
NPHP1O15259 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC19.37■□□□□ 0.69
NPHP1O15259 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
NPHP1O15259 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
NPHP1O15259 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
NPHP1O15259 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
NPHP1O15259 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NPHP1O15259 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NPHP1O15259 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC19.37■□□□□ 0.69
NPHP1O15259 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
NPHP1O15259 SP100-205ENST00000409824 1802 ntTSL 5 BASIC19.37■□□□□ 0.69
NPHP1O15259 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
NPHP1O15259 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC19.37■□□□□ 0.69
NPHP1O15259 DOC2GP-204ENST00000639052 2548 ntBASIC19.36■□□□□ 0.69
NPHP1O15259 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NPHP1O15259 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NPHP1O15259 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC19.36■□□□□ 0.69
NPHP1O15259 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC19.36■□□□□ 0.69
NPHP1O15259 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC19.36■□□□□ 0.69
NPHP1O15259 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NPHP1O15259 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NPHP1O15259 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
NPHP1O15259 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NPHP1O15259 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NPHP1O15259 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NPHP1O15259 NDUFAB1P1-201ENST00000404262 460 ntBASIC19.36■□□□□ 0.69
NPHP1O15259 NUS1P3-201ENST00000423502 862 ntBASIC19.36■□□□□ 0.69
NPHP1O15259 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC19.36■□□□□ 0.69
NPHP1O15259 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC19.36■□□□□ 0.69
NPHP1O15259 EHF-205ENST00000527935 557 ntTSL 2 BASIC19.36■□□□□ 0.69
NPHP1O15259 AC079328.1-201ENST00000560358 952 ntBASIC19.36■□□□□ 0.69
NPHP1O15259 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC19.36■□□□□ 0.69
NPHP1O15259 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC19.36■□□□□ 0.69
NPHP1O15259 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC19.36■□□□□ 0.69
NPHP1O15259 TBCB-211ENST00000589996 724 ntTSL 3 BASIC19.36■□□□□ 0.69
NPHP1O15259 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC19.36■□□□□ 0.69
NPHP1O15259 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC19.36■□□□□ 0.69
NPHP1O15259 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
NPHP1O15259 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NPHP1O15259 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC19.36■□□□□ 0.69
NPHP1O15259 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC19.36■□□□□ 0.69
NPHP1O15259 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
NPHP1O15259 AMT-224ENST00000635808 1610 ntTSL 5 BASIC19.36■□□□□ 0.69
NPHP1O15259 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC19.36■□□□□ 0.69
NPHP1O15259 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NPHP1O15259 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms