Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 MTHFR-210ENST00000641407 2387 ntBASIC14.12□□□□□ -0.15
CLN6Q9NWW5 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 SMN2-210ENST00000511812 867 ntTSL 2 BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 COQ9-214ENST00000567933 882 ntTSL 3 BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 AC064836.3-201ENST00000607928 673 ntBASIC14.12□□□□□ -0.15
CLN6Q9NWW5 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 BSG-215ENST00000618006 1329 ntTSL 2 BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 AMT-224ENST00000635808 1610 ntTSL 5 BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 MRPL3P1-201ENST00000400109 1033 ntBASIC14.11□□□□□ -0.15
CLN6Q9NWW5 AC074386.1-202ENST00000463561 864 ntBASIC14.11□□□□□ -0.15
CLN6Q9NWW5 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 AC112191.1-201ENST00000523689 701 ntBASIC14.11□□□□□ -0.15
CLN6Q9NWW5 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 RARRES2P8-201ENST00000566335 367 ntBASIC14.11□□□□□ -0.15
CLN6Q9NWW5 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 AP002472.1-201ENST00000577490 586 ntBASIC14.11□□□□□ -0.15
CLN6Q9NWW5 IRF5-214ENST00000613821 595 ntTSL 5 BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLN6Q9NWW5 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms