Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC13.84□□□□□ -0.19
CLRN1P58418 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
CLRN1P58418 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC13.84□□□□□ -0.19
CLRN1P58418 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
CLRN1P58418 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 PKIG-203ENST00000372887 769 ntTSL 3 BASIC13.84□□□□□ -0.19
CLRN1P58418 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC13.84□□□□□ -0.19
CLRN1P58418 TOMM22P5-201ENST00000416399 439 ntBASIC13.84□□□□□ -0.19
CLRN1P58418 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC13.84□□□□□ -0.19
CLRN1P58418 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC13.84□□□□□ -0.19
CLRN1P58418 BASP1P1-201ENST00000430708 665 ntBASIC13.84□□□□□ -0.19
CLRN1P58418 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC13.84□□□□□ -0.19
CLRN1P58418 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC13.84□□□□□ -0.19
CLRN1P58418 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC13.84□□□□□ -0.19
CLRN1P58418 AC093214.1-201ENST00000511688 1107 ntBASIC13.84□□□□□ -0.19
CLRN1P58418 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC13.84□□□□□ -0.19
CLRN1P58418 STOM-203ENST00000538954 1257 ntTSL 5 BASIC13.84□□□□□ -0.19
CLRN1P58418 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC13.84□□□□□ -0.19
CLRN1P58418 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
CLRN1P58418 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC13.84□□□□□ -0.19
CLRN1P58418 AC004461.2-201ENST00000629517 803 ntBASIC13.84□□□□□ -0.19
CLRN1P58418 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
CLRN1P58418 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 CYP2AB1P-202ENST00000454440 1456 ntBASIC13.84□□□□□ -0.19
CLRN1P58418 AC138969.3-201ENST00000546612 1459 ntBASIC13.84□□□□□ -0.19
CLRN1P58418 AC138932.2-201ENST00000548268 1459 ntBASIC13.84□□□□□ -0.19
CLRN1P58418 AC126755.4-201ENST00000549796 1459 ntBASIC13.84□□□□□ -0.19
CLRN1P58418 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC13.84□□□□□ -0.19
CLRN1P58418 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 AL121723.1-201ENST00000445194 1519 ntBASIC13.84□□□□□ -0.19
CLRN1P58418 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC13.84□□□□□ -0.19
CLRN1P58418 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
CLRN1P58418 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.19
CLRN1P58418 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC13.83□□□□□ -0.19
CLRN1P58418 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
CLRN1P58418 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
CLRN1P58418 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLRN1P58418 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLRN1P58418 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLRN1P58418 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
CLRN1P58418 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC13.83□□□□□ -0.2
CLRN1P58418 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC13.83□□□□□ -0.2
CLRN1P58418 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CLRN1P58418 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLRN1P58418 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLRN1P58418 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLRN1P58418 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CLRN1P58418 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLRN1P58418 BTBD7P1-201ENST00000447253 1453 ntBASIC13.83□□□□□ -0.2
CLRN1P58418 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CLRN1P58418 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLRN1P58418 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLRN1P58418 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CLRN1P58418 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CLRN1P58418 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC13.83□□□□□ -0.2
CLRN1P58418 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CLRN1P58418 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC13.83□□□□□ -0.2
CLRN1P58418 AC092183.1-201ENST00000469884 875 ntBASIC13.83□□□□□ -0.2
CLRN1P58418 UBL5-208ENST00000593087 320 ntTSL 3 BASIC13.83□□□□□ -0.2
CLRN1P58418 TEX48-202ENST00000612244 662 ntTSL 3 BASIC13.83□□□□□ -0.2
CLRN1P58418 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC13.83□□□□□ -0.2
CLRN1P58418 ORC5-208ENST00000626700 344 ntTSL 3 BASIC13.83□□□□□ -0.2
CLRN1P58418 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CLRN1P58418 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CLRN1P58418 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CLRN1P58418 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLRN1P58418 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLRN1P58418 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CLRN1P58418 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC13.83□□□□□ -0.2
CLRN1P58418 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CLRN1P58418 MFF-204ENST00000353339 2186 ntTSL 5 BASIC13.83□□□□□ -0.2
CLRN1P58418 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLRN1P58418 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms