Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VCANP13611 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VCANP13611 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VCANP13611 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
VCANP13611 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC15.57■□□□□ 0.08
VCANP13611 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
VCANP13611 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VCANP13611 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
VCANP13611 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VCANP13611 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
VCANP13611 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VCANP13611 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC15.57■□□□□ 0.08
VCANP13611 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC15.57■□□□□ 0.08
VCANP13611 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VCANP13611 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC15.57■□□□□ 0.08
VCANP13611 FAU-201ENST00000279259 461 ntTSL 2 BASIC15.57■□□□□ 0.08
VCANP13611 OLA1P2-201ENST00000395519 1264 ntBASIC15.57■□□□□ 0.08
VCANP13611 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC15.57■□□□□ 0.08
VCANP13611 AC083801.1-201ENST00000491689 358 ntBASIC15.57■□□□□ 0.08
VCANP13611 AC092612.1-201ENST00000514501 998 ntBASIC15.57■□□□□ 0.08
VCANP13611 AC087392.5-201ENST00000612517 489 ntBASIC15.57■□□□□ 0.08
VCANP13611 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC15.57■□□□□ 0.08
VCANP13611 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VCANP13611 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
VCANP13611 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VCANP13611 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
VCANP13611 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC15.57■□□□□ 0.08
VCANP13611 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VCANP13611 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VCANP13611 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC15.57■□□□□ 0.08
VCANP13611 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VCANP13611 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VCANP13611 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC15.56■□□□□ 0.08
VCANP13611 DKKL1P1-201ENST00000400550 698 ntBASIC15.56■□□□□ 0.08
VCANP13611 AL139094.1-201ENST00000405549 1188 ntBASIC15.56■□□□□ 0.08
VCANP13611 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VCANP13611 HIST1H2APS2-201ENST00000454426 370 ntBASIC15.56■□□□□ 0.08
VCANP13611 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC15.56■□□□□ 0.08
VCANP13611 MIEF1-215ENST00000637854 213 ntBASIC15.56■□□□□ 0.08
VCANP13611 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VCANP13611 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC15.56■□□□□ 0.08
VCANP13611 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VCANP13611 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
VCANP13611 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VCANP13611 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
VCANP13611 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
VCANP13611 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VCANP13611 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.56■□□□□ 0.08
VCANP13611 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
VCANP13611 SURF4-203ENST00000371991 715 ntTSL 3 BASIC15.56■□□□□ 0.08
VCANP13611 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC15.56■□□□□ 0.08
VCANP13611 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
VCANP13611 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC15.56■□□□□ 0.08
VCANP13611 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VCANP13611 AC078925.2-201ENST00000624013 1973 ntBASIC15.56■□□□□ 0.08
VCANP13611 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
VCANP13611 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC15.56■□□□□ 0.08
VCANP13611 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VCANP13611 CLUHP2-201ENST00000426660 1303 ntBASIC15.56■□□□□ 0.08
VCANP13611 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC15.56■□□□□ 0.08
VCANP13611 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.56■□□□□ 0.08
VCANP13611 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
VCANP13611 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC15.56■□□□□ 0.08
VCANP13611 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC15.56■□□□□ 0.08
VCANP13611 AC022966.2-201ENST00000587434 367 ntBASIC15.56■□□□□ 0.08
VCANP13611 AC097359.3-201ENST00000603982 1210 ntBASIC15.56■□□□□ 0.08
VCANP13611 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VCANP13611 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VCANP13611 ECH1-201ENST00000221418 1411 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VCANP13611 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
VCANP13611 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
VCANP13611 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VCANP13611 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VCANP13611 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC15.55■□□□□ 0.08
VCANP13611 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC15.55■□□□□ 0.08
VCANP13611 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.55■□□□□ 0.08
VCANP13611 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
VCANP13611 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
VCANP13611 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
VCANP13611 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC15.55■□□□□ 0.08
VCANP13611 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VCANP13611 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VCANP13611 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
VCANP13611 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
VCANP13611 PRR13-209ENST00000549924 625 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
VCANP13611 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC15.55■□□□□ 0.08
VCANP13611 DUX4L46-201ENST00000566845 751 ntBASIC15.55■□□□□ 0.08
VCANP13611 AP005264.6-204ENST00000588436 719 ntBASIC15.55■□□□□ 0.08
VCANP13611 SIGLEC18P-201ENST00000602271 909 ntBASIC15.55■□□□□ 0.08
VCANP13611 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VCANP13611 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VCANP13611 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VCANP13611 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC15.55■□□□□ 0.08
VCANP13611 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VCANP13611 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.55■□□□□ 0.08
VCANP13611 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VCANP13611 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VCANP13611 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VCANP13611 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC15.55■□□□□ 0.08
VCANP13611 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms