Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB1P09429 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB1P09429 AC013726.1-201ENST00000563747 2285 ntBASIC18.2■□□□□ 0.5
HMGB1P09429 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB1P09429 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC18.2■□□□□ 0.5
HMGB1P09429 LINC00528-201ENST00000600723 2160 ntBASIC18.2■□□□□ 0.5
HMGB1P09429 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
HMGB1P09429 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
HMGB1P09429 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
HMGB1P09429 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB1P09429 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB1P09429 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC18.2■□□□□ 0.5
HMGB1P09429 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB1P09429 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB1P09429 OSM-203ENST00000403463 464 ntTSL 3 BASIC18.2■□□□□ 0.5
HMGB1P09429 TMPRSS11CP-201ENST00000453277 683 ntBASIC18.2■□□□□ 0.5
HMGB1P09429 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC18.2■□□□□ 0.5
HMGB1P09429 CD81-207ENST00000481687 890 ntTSL 2 BASIC18.2■□□□□ 0.5
HMGB1P09429 AC055876.2-201ENST00000531834 546 ntBASIC18.2■□□□□ 0.5
HMGB1P09429 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
HMGB1P09429 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC18.2■□□□□ 0.5
HMGB1P09429 AL049840.4-201ENST00000602422 811 ntBASIC18.2■□□□□ 0.5
HMGB1P09429 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB1P09429 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB1P09429 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
HMGB1P09429 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB1P09429 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB1P09429 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC18.2■□□□□ 0.5
HMGB1P09429 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB1P09429 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
HMGB1P09429 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
HMGB1P09429 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB1P09429 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC18.2■□□□□ 0.5
HMGB1P09429 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB1P09429 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
HMGB1P09429 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB1P09429 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB1P09429 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB1P09429 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB1P09429 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB1P09429 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC18.19■□□□□ 0.5
HMGB1P09429 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
HMGB1P09429 SLC7A15P-201ENST00000424028 1363 ntBASIC18.19■□□□□ 0.5
HMGB1P09429 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB1P09429 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC18.19■□□□□ 0.5
HMGB1P09429 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB1P09429 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB1P09429 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB1P09429 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB1P09429 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB1P09429 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB1P09429 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB1P09429 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB1P09429 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC18.19■□□□□ 0.5
HMGB1P09429 AL645937.2-201ENST00000396808 931 ntBASIC18.19■□□□□ 0.5
HMGB1P09429 RAC2-204ENST00000406508 893 ntTSL 5 BASIC18.19■□□□□ 0.5
HMGB1P09429 SPTLC1P1-201ENST00000447199 261 ntBASIC18.19■□□□□ 0.5
HMGB1P09429 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC18.19■□□□□ 0.5
HMGB1P09429 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
HMGB1P09429 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB1P09429 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
HMGB1P09429 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC18.19■□□□□ 0.5
HMGB1P09429 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC18.19■□□□□ 0.5
HMGB1P09429 INO80C-206ENST00000586489 594 ntTSL 3 BASIC18.19■□□□□ 0.5
HMGB1P09429 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
HMGB1P09429 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB1P09429 AL662799.1-202ENST00000614205 422 ntBASIC18.19■□□□□ 0.5
HMGB1P09429 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB1P09429 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC18.19■□□□□ 0.5
HMGB1P09429 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
HMGB1P09429 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB1P09429 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB1P09429 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB1P09429 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB1P09429 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB1P09429 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB1P09429 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
HMGB1P09429 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB1P09429 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC18.19■□□□□ 0.5
HMGB1P09429 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC18.19■□□□□ 0.5
HMGB1P09429 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
HMGB1P09429 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB1P09429 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB1P09429 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB1P09429 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB1P09429 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB1P09429 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC18.18■□□□□ 0.5
HMGB1P09429 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB1P09429 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB1P09429 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB1P09429 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC18.18■□□□□ 0.5
HMGB1P09429 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB1P09429 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB1P09429 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
HMGB1P09429 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
HMGB1P09429 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC18.18■□□□□ 0.5
HMGB1P09429 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB1P09429 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC18.18■□□□□ 0.5
HMGB1P09429 SYS1-203ENST00000414310 795 ntTSL 3 BASIC18.18■□□□□ 0.5
HMGB1P09429 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms