Protein–RNA interactions for Protein: Q60649

Clpb, Caseinolytic peptidase B protein homolog, mousemouse

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClpbQ60649 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
ClpbQ60649 Gm15082-201ENSMUST00000147045 1960 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Fzd4-201ENSMUST00000058755 6720 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Ptpn14-202ENSMUST00000097442 10746 ntAPPRIS P2 TSL 5 BASIC11.94□□□□□ -0.5
ClpbQ60649 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Fam198a-203ENSMUST00000214536 2789 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
ClpbQ60649 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC11.94□□□□□ -0.5
ClpbQ60649 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
ClpbQ60649 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Gm4986-201ENSMUST00000119731 549 ntBASIC11.94□□□□□ -0.5
ClpbQ60649 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC11.94□□□□□ -0.5
ClpbQ60649 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
ClpbQ60649 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC11.94□□□□□ -0.5
ClpbQ60649 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC11.94□□□□□ -0.5
ClpbQ60649 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC11.94□□□□□ -0.5
ClpbQ60649 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
ClpbQ60649 Gm45930-201ENSMUST00000221330 292 ntBASIC11.94□□□□□ -0.5
ClpbQ60649 AC132317.1-201ENSMUST00000227227 962 ntBASIC11.94□□□□□ -0.5
ClpbQ60649 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
ClpbQ60649 Cd163l1-204ENSMUST00000209637 3210 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC11.94□□□□□ -0.5
ClpbQ60649 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Paupar-201ENSMUST00000194826 3482 ntBASIC11.94□□□□□ -0.5
ClpbQ60649 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Gm37437-201ENSMUST00000194451 1937 ntBASIC11.94□□□□□ -0.5
ClpbQ60649 Asphd2-201ENSMUST00000031291 2678 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
ClpbQ60649 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
ClpbQ60649 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
ClpbQ60649 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
ClpbQ60649 Olfr742-202ENSMUST00000213935 2117 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
ClpbQ60649 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
ClpbQ60649 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
ClpbQ60649 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
ClpbQ60649 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
ClpbQ60649 Duox1-201ENSMUST00000099461 5267 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
ClpbQ60649 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
ClpbQ60649 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC11.93□□□□□ -0.5
ClpbQ60649 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
ClpbQ60649 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
ClpbQ60649 Gm15370-201ENSMUST00000117158 253 ntBASIC11.93□□□□□ -0.5
ClpbQ60649 Gm13342-201ENSMUST00000121055 207 ntBASIC11.93□□□□□ -0.5
ClpbQ60649 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC11.93□□□□□ -0.5
ClpbQ60649 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
ClpbQ60649 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC11.93□□□□□ -0.5
ClpbQ60649 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC11.93□□□□□ -0.5
ClpbQ60649 Gm7046-201ENSMUST00000221351 977 ntBASIC11.93□□□□□ -0.5
ClpbQ60649 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
ClpbQ60649 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
ClpbQ60649 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
ClpbQ60649 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
ClpbQ60649 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
ClpbQ60649 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
ClpbQ60649 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
ClpbQ60649 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC11.93□□□□□ -0.5
ClpbQ60649 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC11.93□□□□□ -0.5
ClpbQ60649 Tgfbr2-201ENSMUST00000035014 3476 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
ClpbQ60649 Pcdhac1-201ENSMUST00000007584 5419 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
ClpbQ60649 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
ClpbQ60649 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
ClpbQ60649 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
ClpbQ60649 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
ClpbQ60649 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
ClpbQ60649 Sdad1-201ENSMUST00000031364 5020 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
ClpbQ60649 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
ClpbQ60649 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
ClpbQ60649 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
ClpbQ60649 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
ClpbQ60649 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
ClpbQ60649 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
ClpbQ60649 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
ClpbQ60649 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC11.92□□□□□ -0.5
ClpbQ60649 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC11.92□□□□□ -0.5
ClpbQ60649 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms