Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMARCA1P28370 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMARCA1P28370 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMARCA1P28370 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMARCA1P28370 AP000845.1-201ENST00000581677 2131 ntBASIC17.66■□□□□ 0.42
SMARCA1P28370 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SMARCA1P28370 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMARCA1P28370 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
SMARCA1P28370 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMARCA1P28370 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
SMARCA1P28370 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
SMARCA1P28370 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMARCA1P28370 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC17.66■□□□□ 0.42
SMARCA1P28370 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMARCA1P28370 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMARCA1P28370 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
SMARCA1P28370 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SMARCA1P28370 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC17.66■□□□□ 0.42
SMARCA1P28370 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
SMARCA1P28370 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC17.66■□□□□ 0.42
SMARCA1P28370 BOLA2P3-201ENST00000404566 256 ntBASIC17.66■□□□□ 0.42
SMARCA1P28370 RPL28-203ENST00000428193 573 ntTSL 2 BASIC17.66■□□□□ 0.42
SMARCA1P28370 RPL28-204ENST00000431533 590 ntTSL 2 BASIC17.66■□□□□ 0.42
SMARCA1P28370 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC17.66■□□□□ 0.42
SMARCA1P28370 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC17.66■□□□□ 0.42
SMARCA1P28370 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
SMARCA1P28370 RPL28-207ENST00000558815 616 ntTSL 2 BASIC17.66■□□□□ 0.42
SMARCA1P28370 APRT-204ENST00000563655 709 ntTSL 5 BASIC17.66■□□□□ 0.42
SMARCA1P28370 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC17.66■□□□□ 0.42
SMARCA1P28370 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC17.66■□□□□ 0.42
SMARCA1P28370 AC145423.3-201ENST00000615987 467 ntBASIC17.66■□□□□ 0.42
SMARCA1P28370 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SMARCA1P28370 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC17.66■□□□□ 0.42
SMARCA1P28370 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
SMARCA1P28370 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMARCA1P28370 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
SMARCA1P28370 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SMARCA1P28370 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMARCA1P28370 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMARCA1P28370 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMARCA1P28370 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMARCA1P28370 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMARCA1P28370 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
SMARCA1P28370 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMARCA1P28370 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.66■□□□□ 0.42
SMARCA1P28370 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
SMARCA1P28370 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
SMARCA1P28370 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SMARCA1P28370 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.65■□□□□ 0.42
SMARCA1P28370 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
SMARCA1P28370 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SMARCA1P28370 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SMARCA1P28370 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
SMARCA1P28370 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SMARCA1P28370 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SMARCA1P28370 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SMARCA1P28370 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SMARCA1P28370 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.65■□□□□ 0.42
SMARCA1P28370 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
SMARCA1P28370 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.65■□□□□ 0.42
SMARCA1P28370 AL513477.1-201ENST00000602865 2407 ntBASIC17.65■□□□□ 0.42
SMARCA1P28370 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SMARCA1P28370 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
SMARCA1P28370 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
SMARCA1P28370 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
SMARCA1P28370 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC17.65■□□□□ 0.42
SMARCA1P28370 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC17.65■□□□□ 0.42
SMARCA1P28370 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
SMARCA1P28370 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC17.65■□□□□ 0.42
SMARCA1P28370 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC17.65■□□□□ 0.42
SMARCA1P28370 KRT17P8-201ENST00000540749 863 ntBASIC17.65■□□□□ 0.42
SMARCA1P28370 RPL28-206ENST00000558752 671 ntTSL 3 BASIC17.65■□□□□ 0.42
SMARCA1P28370 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC17.65■□□□□ 0.42
SMARCA1P28370 ORC6-206ENST00000568364 888 ntTSL 5 BASIC17.65■□□□□ 0.42
SMARCA1P28370 AC025279.2-201ENST00000569730 653 ntBASIC17.65■□□□□ 0.42
SMARCA1P28370 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SMARCA1P28370 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SMARCA1P28370 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SMARCA1P28370 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SMARCA1P28370 SLC9A7P1-202ENST00000556476 2239 ntBASIC17.65■□□□□ 0.42
SMARCA1P28370 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SMARCA1P28370 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC17.65■□□□□ 0.42
SMARCA1P28370 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SMARCA1P28370 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SMARCA1P28370 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
SMARCA1P28370 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
SMARCA1P28370 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SMARCA1P28370 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
SMARCA1P28370 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SMARCA1P28370 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC17.65■□□□□ 0.42
SMARCA1P28370 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
SMARCA1P28370 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
SMARCA1P28370 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
SMARCA1P28370 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC17.65■□□□□ 0.42
SMARCA1P28370 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC17.64■□□□□ 0.42
SMARCA1P28370 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC17.64■□□□□ 0.42
SMARCA1P28370 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.42
SMARCA1P28370 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC17.64■□□□□ 0.42
SMARCA1P28370 AC132872.4-202ENST00000622924 2756 ntBASIC17.64■□□□□ 0.41
SMARCA1P28370 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms