Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
RaraP11416 Ska3-201ENSMUST00000022536 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RaraP11416 Ocln-203ENSMUST00000159459 1950 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
RaraP11416 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
RaraP11416 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RaraP11416 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC13.43□□□□□ -0.26
RaraP11416 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
RaraP11416 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RaraP11416 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RaraP11416 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
RaraP11416 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
RaraP11416 Aifm2-203ENSMUST00000099706 3086 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RaraP11416 Gm43727-201ENSMUST00000198021 2647 ntBASIC13.43□□□□□ -0.26
RaraP11416 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC13.42□□□□□ -0.26
RaraP11416 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RaraP11416 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
RaraP11416 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RaraP11416 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC13.42□□□□□ -0.26
RaraP11416 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC13.42□□□□□ -0.26
RaraP11416 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
RaraP11416 Specc1-212ENSMUST00000202178 2932 ntTSL 5 BASIC13.42□□□□□ -0.26
RaraP11416 Gm7789-202ENSMUST00000211273 1400 ntBASIC13.42□□□□□ -0.26
RaraP11416 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RaraP11416 Arhgef3-204ENSMUST00000225949 3198 ntBASIC13.42□□□□□ -0.26
RaraP11416 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RaraP11416 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RaraP11416 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RaraP11416 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC13.42□□□□□ -0.26
RaraP11416 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC13.42□□□□□ -0.26
RaraP11416 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
RaraP11416 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RaraP11416 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC13.42□□□□□ -0.26
RaraP11416 Gm20614-201ENSMUST00000177106 632 ntBASIC13.42□□□□□ -0.26
RaraP11416 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC13.42□□□□□ -0.26
RaraP11416 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC13.42□□□□□ -0.26
RaraP11416 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RaraP11416 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RaraP11416 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RaraP11416 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RaraP11416 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC13.42□□□□□ -0.26
RaraP11416 Cmtm6-201ENSMUST00000035007 3383 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RaraP11416 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RaraP11416 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC13.42□□□□□ -0.26
RaraP11416 Fads1-201ENSMUST00000010807 3456 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RaraP11416 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RaraP11416 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RaraP11416 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
RaraP11416 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RaraP11416 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 Mgat1-203ENSMUST00000109194 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 Rgs6-222ENSMUST00000202210 3069 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
RaraP11416 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 Gm10339-203ENSMUST00000225409 1671 ntBASIC13.41□□□□□ -0.26
RaraP11416 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 Pcdhga11-201ENSMUST00000061279 4756 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 Stat3-203ENSMUST00000127638 4516 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
RaraP11416 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
RaraP11416 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 Gm18304-201ENSMUST00000189162 546 ntBASIC13.41□□□□□ -0.26
RaraP11416 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 Gm43371-201ENSMUST00000202838 1031 ntBASIC13.41□□□□□ -0.26
RaraP11416 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC13.41□□□□□ -0.26
RaraP11416 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC13.41□□□□□ -0.26
RaraP11416 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
RaraP11416 Rapgef3-204ENSMUST00000128775 3586 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 Sppl2a-201ENSMUST00000028844 5616 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
RaraP11416 Rbm10-202ENSMUST00000082089 2562 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
RaraP11416 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 Zfp810-201ENSMUST00000086278 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
RaraP11416 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC13.4□□□□□ -0.26
RaraP11416 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 Gm8793-201ENSMUST00000183069 1303 ntBASIC13.4□□□□□ -0.26
RaraP11416 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
RaraP11416 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms