Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TNFP01375 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TNFP01375 BANP-204ENST00000393208 2283 ntTSL 2 BASIC15.12■□□□□ 0.01
TNFP01375 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TNFP01375 AC092127.1-201ENST00000567093 3455 ntBASIC15.12■□□□□ 0.01
TNFP01375 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TNFP01375 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15.12■□□□□ 0.01
TNFP01375 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TNFP01375 RPL5P21-201ENST00000404620 815 ntBASIC15.12■□□□□ 0.01
TNFP01375 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
TNFP01375 KLF2P2-201ENST00000416807 1039 ntBASIC15.12■□□□□ 0.01
TNFP01375 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
TNFP01375 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC15.12■□□□□ 0.01
TNFP01375 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TNFP01375 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC15.12■□□□□ 0.01
TNFP01375 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC15.12■□□□□ 0.01
TNFP01375 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC15.12■□□□□ 0.01
TNFP01375 RNA5SP412-201ENST00000516234 123 ntBASIC15.12■□□□□ 0.01
TNFP01375 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TNFP01375 KRT90P-201ENST00000549264 1064 ntBASIC15.12■□□□□ 0.01
TNFP01375 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC15.12■□□□□ 0.01
TNFP01375 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC15.12■□□□□ 0.01
TNFP01375 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC15.12■□□□□ 0.01
TNFP01375 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC15.12■□□□□ 0.01
TNFP01375 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC15.12■□□□□ 0.01
TNFP01375 AC132938.4-201ENST00000623835 848 ntBASIC15.12■□□□□ 0.01
TNFP01375 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TNFP01375 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TNFP01375 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
TNFP01375 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
TNFP01375 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
TNFP01375 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.12■□□□□ 0.01
TNFP01375 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TNFP01375 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TNFP01375 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
TNFP01375 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
TNFP01375 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
TNFP01375 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TNFP01375 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TNFP01375 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
TNFP01375 LINC02199-201ENST00000506655 2702 ntBASIC15.11■□□□□ 0.01
TNFP01375 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC15.11■□□□□ 0.01
TNFP01375 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC15.11■□□□□ 0.01
TNFP01375 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC15.11■□□□□ 0.01
TNFP01375 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
TNFP01375 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.11■□□□□ 0.01
TNFP01375 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TNFP01375 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.11■□□□□ 0.01
TNFP01375 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
TNFP01375 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TNFP01375 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TNFP01375 AL645937.2-201ENST00000396808 931 ntBASIC15.11■□□□□ 0.01
TNFP01375 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TNFP01375 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC15.11■□□□□ 0.01
TNFP01375 CNN2P8-201ENST00000421872 913 ntBASIC15.11■□□□□ 0.01
TNFP01375 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
TNFP01375 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TNFP01375 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.11■□□□□ 0.01
TNFP01375 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TNFP01375 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC15.11■□□□□ 0.01
TNFP01375 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC15.11■□□□□ 0.01
TNFP01375 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
TNFP01375 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC15.11■□□□□ 0.01
TNFP01375 AL583810.1-201ENST00000553344 1045 ntBASIC15.11■□□□□ 0.01
TNFP01375 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC15.11■□□□□ 0.01
TNFP01375 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TNFP01375 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TNFP01375 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC15.11■□□□□ 0.01
TNFP01375 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC15.11■□□□□ 0.01
TNFP01375 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC15.11■□□□□ 0.01
TNFP01375 AL645728.2-202ENST00000641679 227 ntBASIC15.11■□□□□ 0.01
TNFP01375 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
TNFP01375 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
TNFP01375 AC022188.1-201ENST00000620960 1664 ntBASIC15.11■□□□□ 0.01
TNFP01375 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC15.11■□□□□ 0.01
TNFP01375 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC15.11■□□□□ 0.01
TNFP01375 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
TNFP01375 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
TNFP01375 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
TNFP01375 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC15.11■□□□□ 0.01
TNFP01375 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TNFP01375 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TNFP01375 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
TNFP01375 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC15.11■□□□□ 0.01
TNFP01375 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TNFP01375 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TNFP01375 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TNFP01375 REXO1L6P-201ENST00000603433 1515 ntBASIC15.11■□□□□ 0.01
TNFP01375 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
TNFP01375 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TNFP01375 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
TNFP01375 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TNFP01375 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TNFP01375 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
TNFP01375 PRAL-201ENST00000624952 3286 ntBASIC15.11■□□□□ 0.01
TNFP01375 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
TNFP01375 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
TNFP01375 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC15.1■□□□□ 0.01
TNFP01375 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TNFP01375 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms