Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL5A3P25940 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL5A3P25940 SUPT20HL2-201ENST00000486479 2409 ntBASIC19.1■□□□□ 0.65
COL5A3P25940 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL5A3P25940 OR2K2-202ENST00000374428 1038 ntBASIC19.1■□□□□ 0.65
COL5A3P25940 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC19.1■□□□□ 0.65
COL5A3P25940 AL645933.1-201ENST00000440087 609 ntBASIC19.1■□□□□ 0.65
COL5A3P25940 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC19.1■□□□□ 0.65
COL5A3P25940 PAM16-211ENST00000575848 518 ntTSL 3 BASIC19.1■□□□□ 0.65
COL5A3P25940 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
COL5A3P25940 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC19.1■□□□□ 0.65
COL5A3P25940 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC19.1■□□□□ 0.65
COL5A3P25940 AC008805.1-201ENST00000590892 364 ntBASIC19.1■□□□□ 0.65
COL5A3P25940 AC007881.3-201ENST00000608897 607 ntBASIC19.1■□□□□ 0.65
COL5A3P25940 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
COL5A3P25940 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
COL5A3P25940 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL5A3P25940 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL5A3P25940 NKILA-202ENST00000614771 2598 ntBASIC19.1■□□□□ 0.65
COL5A3P25940 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC19.1■□□□□ 0.65
COL5A3P25940 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL5A3P25940 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL5A3P25940 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
COL5A3P25940 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC19.09■□□□□ 0.65
COL5A3P25940 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL5A3P25940 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL5A3P25940 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
COL5A3P25940 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL5A3P25940 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC19.09■□□□□ 0.65
COL5A3P25940 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC19.09■□□□□ 0.65
COL5A3P25940 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC19.09■□□□□ 0.65
COL5A3P25940 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC19.09■□□□□ 0.65
COL5A3P25940 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
COL5A3P25940 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC19.09■□□□□ 0.65
COL5A3P25940 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC19.09■□□□□ 0.65
COL5A3P25940 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL5A3P25940 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC19.09■□□□□ 0.65
COL5A3P25940 AC006449.5-201ENST00000610658 2098 ntBASIC19.09■□□□□ 0.65
COL5A3P25940 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL5A3P25940 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL5A3P25940 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL5A3P25940 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
COL5A3P25940 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL5A3P25940 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC19.09■□□□□ 0.65
COL5A3P25940 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL5A3P25940 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL5A3P25940 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
COL5A3P25940 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
COL5A3P25940 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
COL5A3P25940 RN7SL8P-201ENST00000461771 266 ntBASIC19.08■□□□□ 0.65
COL5A3P25940 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC19.08■□□□□ 0.65
COL5A3P25940 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC19.08■□□□□ 0.65
COL5A3P25940 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC19.08■□□□□ 0.65
COL5A3P25940 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC19.08■□□□□ 0.65
COL5A3P25940 AC003102.2-201ENST00000589195 1469 ntBASIC19.08■□□□□ 0.65
COL5A3P25940 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL5A3P25940 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL5A3P25940 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL5A3P25940 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
COL5A3P25940 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL5A3P25940 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC19.08■□□□□ 0.65
COL5A3P25940 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
COL5A3P25940 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL5A3P25940 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC19.08■□□□□ 0.64
COL5A3P25940 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL5A3P25940 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL5A3P25940 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL5A3P25940 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL5A3P25940 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
COL5A3P25940 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
COL5A3P25940 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
COL5A3P25940 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL5A3P25940 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC19.08■□□□□ 0.64
COL5A3P25940 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC19.08■□□□□ 0.64
COL5A3P25940 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
COL5A3P25940 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC19.08■□□□□ 0.64
COL5A3P25940 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC19.08■□□□□ 0.64
COL5A3P25940 WT1-AS_6.1-201ENST00000614919 121 ntBASIC19.08■□□□□ 0.64
COL5A3P25940 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC19.08■□□□□ 0.64
COL5A3P25940 AL805961.1-201ENST00000642026 753 ntBASIC19.08■□□□□ 0.64
COL5A3P25940 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC19.08■□□□□ 0.64
COL5A3P25940 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
COL5A3P25940 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
COL5A3P25940 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL5A3P25940 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL5A3P25940 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL5A3P25940 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL5A3P25940 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL5A3P25940 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL5A3P25940 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL5A3P25940 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
COL5A3P25940 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
COL5A3P25940 AC006122.1-201ENST00000493323 440 ntBASIC19.07■□□□□ 0.64
COL5A3P25940 IGHV3-37-201ENST00000518544 340 ntBASIC19.07■□□□□ 0.64
COL5A3P25940 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
COL5A3P25940 NEU3-205ENST00000531619 582 ntTSL 5 BASIC19.07■□□□□ 0.64
COL5A3P25940 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC19.07■□□□□ 0.64
COL5A3P25940 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC19.07■□□□□ 0.64
COL5A3P25940 CYP4F23P-201ENST00000593402 1579 ntBASIC19.07■□□□□ 0.64
COL5A3P25940 AL137783.1-201ENST00000623494 1896 ntBASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms