Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CDX1P47902 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
CDX1P47902 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC12.86□□□□□ -0.35
CDX1P47902 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CDX1P47902 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC12.86□□□□□ -0.35
CDX1P47902 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC12.86□□□□□ -0.35
CDX1P47902 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CDX1P47902 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CDX1P47902 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CDX1P47902 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
CDX1P47902 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CDX1P47902 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CDX1P47902 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC12.86□□□□□ -0.35
CDX1P47902 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CDX1P47902 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CDX1P47902 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CDX1P47902 AL139400.1-201ENST00000366220 510 ntBASIC12.86□□□□□ -0.35
CDX1P47902 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC12.86□□□□□ -0.35
CDX1P47902 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC12.86□□□□□ -0.35
CDX1P47902 PTMS-202ENST00000389462 773 ntTSL 2 BASIC12.86□□□□□ -0.35
CDX1P47902 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC12.86□□□□□ -0.35
CDX1P47902 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC12.86□□□□□ -0.35
CDX1P47902 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
CDX1P47902 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC12.86□□□□□ -0.35
CDX1P47902 AC027796.2-201ENST00000575326 344 ntBASIC12.86□□□□□ -0.35
CDX1P47902 LSM12-202ENST00000585388 942 ntTSL 3 BASIC12.86□□□□□ -0.35
CDX1P47902 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CDX1P47902 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC12.86□□□□□ -0.35
CDX1P47902 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CDX1P47902 AC027307.2-201ENST00000591252 911 ntBASIC12.86□□□□□ -0.35
CDX1P47902 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC12.86□□□□□ -0.35
CDX1P47902 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
CDX1P47902 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC12.86□□□□□ -0.35
CDX1P47902 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CDX1P47902 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC12.86□□□□□ -0.35
CDX1P47902 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
CDX1P47902 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
CDX1P47902 UXT-AS1-201ENST00000590504 1525 ntBASIC12.86□□□□□ -0.35
CDX1P47902 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC12.86□□□□□ -0.35
CDX1P47902 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
CDX1P47902 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC12.86□□□□□ -0.35
CDX1P47902 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CDX1P47902 AC097376.2-205ENST00000610159 5334 ntBASIC12.86□□□□□ -0.35
CDX1P47902 DKFZP434A062-201ENST00000573103 5021 ntBASIC12.86□□□□□ -0.35
CDX1P47902 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CDX1P47902 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC12.86□□□□□ -0.35
CDX1P47902 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CDX1P47902 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
CDX1P47902 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
CDX1P47902 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
CDX1P47902 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CDX1P47902 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC12.86□□□□□ -0.35
CDX1P47902 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
CDX1P47902 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
CDX1P47902 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 AL023775.1-201ENST00000454907 1746 ntBASIC12.85□□□□□ -0.35
CDX1P47902 PC-204ENST00000524491 1714 ntTSL 2 BASIC12.85□□□□□ -0.35
CDX1P47902 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC12.85□□□□□ -0.35
CDX1P47902 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC12.85□□□□□ -0.35
CDX1P47902 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC12.85□□□□□ -0.35
CDX1P47902 AL356585.2-201ENST00000625078 2396 ntBASIC12.85□□□□□ -0.35
CDX1P47902 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC12.85□□□□□ -0.35
CDX1P47902 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC12.85□□□□□ -0.35
CDX1P47902 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC12.85□□□□□ -0.35
CDX1P47902 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
CDX1P47902 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
CDX1P47902 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
CDX1P47902 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
CDX1P47902 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC12.85□□□□□ -0.35
CDX1P47902 RPL30-202ENST00000396070 440 ntTSL 2 BASIC12.85□□□□□ -0.35
CDX1P47902 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC12.85□□□□□ -0.35
CDX1P47902 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC12.85□□□□□ -0.35
CDX1P47902 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC12.85□□□□□ -0.35
CDX1P47902 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC12.85□□□□□ -0.35
CDX1P47902 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
CDX1P47902 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC12.85□□□□□ -0.35
CDX1P47902 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC12.85□□□□□ -0.35
CDX1P47902 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC12.85□□□□□ -0.35
CDX1P47902 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC12.85□□□□□ -0.35
CDX1P47902 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC12.85□□□□□ -0.35
CDX1P47902 AL512356.2-201ENST00000546955 174 ntBASIC12.85□□□□□ -0.35
CDX1P47902 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC12.85□□□□□ -0.35
CDX1P47902 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
CDX1P47902 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms