Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC25.07■■□□□ 1.6
IFT140Q96RY7 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC25.07■■□□□ 1.6
IFT140Q96RY7 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
IFT140Q96RY7 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
IFT140Q96RY7 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC25.07■■□□□ 1.6
IFT140Q96RY7 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC25.07■■□□□ 1.6
IFT140Q96RY7 RN7SL396P-201ENST00000471086 295 ntBASIC25.07■■□□□ 1.6
IFT140Q96RY7 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC25.07■■□□□ 1.6
IFT140Q96RY7 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC25.07■■□□□ 1.6
IFT140Q96RY7 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC25.07■■□□□ 1.6
IFT140Q96RY7 AC011247.3-201ENST00000603297 438 ntBASIC25.07■■□□□ 1.6
IFT140Q96RY7 AC006158.1-201ENST00000610661 249 ntBASIC25.07■■□□□ 1.6
IFT140Q96RY7 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC25.07■■□□□ 1.6
IFT140Q96RY7 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
IFT140Q96RY7 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
IFT140Q96RY7 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC25.06■■□□□ 1.6
IFT140Q96RY7 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
IFT140Q96RY7 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
IFT140Q96RY7 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
IFT140Q96RY7 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
IFT140Q96RY7 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC25.06■■□□□ 1.6
IFT140Q96RY7 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
IFT140Q96RY7 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
IFT140Q96RY7 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC25.06■■□□□ 1.6
IFT140Q96RY7 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC25.06■■□□□ 1.6
IFT140Q96RY7 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC25.06■■□□□ 1.6
IFT140Q96RY7 TSPY25P-201ENST00000429463 745 ntBASIC25.06■■□□□ 1.6
IFT140Q96RY7 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC25.06■■□□□ 1.6
IFT140Q96RY7 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC25.06■■□□□ 1.6
IFT140Q96RY7 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC25.06■■□□□ 1.6
IFT140Q96RY7 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC25.06■■□□□ 1.6
IFT140Q96RY7 AC018695.6-201ENST00000614011 534 ntBASIC25.06■■□□□ 1.6
IFT140Q96RY7 AC009560.1-201ENST00000620208 434 ntBASIC25.06■■□□□ 1.6
IFT140Q96RY7 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC25.06■■□□□ 1.6
IFT140Q96RY7 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
IFT140Q96RY7 AP001184.1-201ENST00000637936 376 ntBASIC25.06■■□□□ 1.6
IFT140Q96RY7 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
IFT140Q96RY7 CYP4F23P-201ENST00000593402 1579 ntBASIC25.06■■□□□ 1.6
IFT140Q96RY7 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
IFT140Q96RY7 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC25.06■■□□□ 1.6
IFT140Q96RY7 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC25.06■■□□□ 1.6
IFT140Q96RY7 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
IFT140Q96RY7 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC25.06■■□□□ 1.6
IFT140Q96RY7 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC25.05■■□□□ 1.6
IFT140Q96RY7 REXO1L5P-201ENST00000622260 2098 ntBASIC25.05■■□□□ 1.6
IFT140Q96RY7 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
IFT140Q96RY7 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
IFT140Q96RY7 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC25.05■■□□□ 1.6
IFT140Q96RY7 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC25.05■■□□□ 1.6
IFT140Q96RY7 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
IFT140Q96RY7 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC25.05■■□□□ 1.6
IFT140Q96RY7 AL807761.2-201ENST00000422849 729 ntBASIC25.05■■□□□ 1.6
IFT140Q96RY7 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC25.05■■□□□ 1.6
IFT140Q96RY7 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC25.05■■□□□ 1.6
IFT140Q96RY7 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC25.05■■□□□ 1.6
IFT140Q96RY7 AP000911.2-201ENST00000534330 502 ntBASIC25.05■■□□□ 1.6
IFT140Q96RY7 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC25.05■■□□□ 1.6
IFT140Q96RY7 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
IFT140Q96RY7 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
IFT140Q96RY7 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
IFT140Q96RY7 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC25.05■■□□□ 1.6
IFT140Q96RY7 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
IFT140Q96RY7 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
IFT140Q96RY7 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
IFT140Q96RY7 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC25.05■■□□□ 1.6
IFT140Q96RY7 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
IFT140Q96RY7 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
IFT140Q96RY7 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
IFT140Q96RY7 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC25.04■■□□□ 1.6
IFT140Q96RY7 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
IFT140Q96RY7 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
IFT140Q96RY7 Z69890.1-201ENST00000382990 339 ntBASIC25.04■■□□□ 1.6
IFT140Q96RY7 AC092638.2-201ENST00000441105 947 ntBASIC25.04■■□□□ 1.6
IFT140Q96RY7 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
IFT140Q96RY7 AREG-202ENST00000502307 956 ntTSL 5 BASIC25.04■■□□□ 1.6
IFT140Q96RY7 ALG3P1-201ENST00000508806 1114 ntBASIC25.04■■□□□ 1.6
IFT140Q96RY7 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC25.04■■□□□ 1.6
IFT140Q96RY7 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC25.04■■□□□ 1.6
IFT140Q96RY7 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC25.04■■□□□ 1.6
IFT140Q96RY7 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
IFT140Q96RY7 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC25.04■■□□□ 1.6
IFT140Q96RY7 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
IFT140Q96RY7 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC25.04■■□□□ 1.6
IFT140Q96RY7 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
IFT140Q96RY7 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC25.04■■□□□ 1.6
IFT140Q96RY7 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
IFT140Q96RY7 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
IFT140Q96RY7 KRT18P9-201ENST00000604826 1300 ntBASIC25.04■■□□□ 1.6
IFT140Q96RY7 LINC01815-202ENST00000641468 1409 ntBASIC25.04■■□□□ 1.6
IFT140Q96RY7 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC25.03■■□□□ 1.6
IFT140Q96RY7 AC020910.5-201ENST00000623668 1865 ntBASIC25.03■■□□□ 1.6
IFT140Q96RY7 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
IFT140Q96RY7 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
IFT140Q96RY7 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
IFT140Q96RY7 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
IFT140Q96RY7 SERF2-209ENST00000409646 559 ntTSL 4 BASIC25.03■■□□□ 1.6
IFT140Q96RY7 KRT18P36-201ENST00000411618 1276 ntBASIC25.03■■□□□ 1.6
IFT140Q96RY7 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC25.03■■□□□ 1.6
IFT140Q96RY7 AC004837.1-201ENST00000446267 564 ntBASIC25.03■■□□□ 1.6
IFT140Q96RY7 RPSAP15-201ENST00000448168 861 ntBASIC25.03■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms