Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 AC022188.1-201ENST00000620960 1664 ntBASIC15.83■□□□□ 0.12
CHFRQ96EP1 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
CHFRQ96EP1 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHFRQ96EP1 AC148477.4-201ENST00000613430 1793 ntBASIC15.82■□□□□ 0.12
CHFRQ96EP1 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHFRQ96EP1 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC15.82■□□□□ 0.12
CHFRQ96EP1 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHFRQ96EP1 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CHFRQ96EP1 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CHFRQ96EP1 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC15.82■□□□□ 0.12
CHFRQ96EP1 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHFRQ96EP1 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
CHFRQ96EP1 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.82■□□□□ 0.12
CHFRQ96EP1 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHFRQ96EP1 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
CHFRQ96EP1 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHFRQ96EP1 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHFRQ96EP1 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHFRQ96EP1 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
CHFRQ96EP1 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHFRQ96EP1 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
CHFRQ96EP1 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHFRQ96EP1 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC15.82■□□□□ 0.12
CHFRQ96EP1 AC007969.1-201ENST00000433675 447 ntBASIC15.82■□□□□ 0.12
CHFRQ96EP1 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC15.82■□□□□ 0.12
CHFRQ96EP1 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CHFRQ96EP1 AL591846.1-201ENST00000451736 433 ntBASIC15.82■□□□□ 0.12
CHFRQ96EP1 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
CHFRQ96EP1 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
CHFRQ96EP1 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC15.82■□□□□ 0.12
CHFRQ96EP1 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC15.82■□□□□ 0.12
CHFRQ96EP1 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC15.82■□□□□ 0.12
CHFRQ96EP1 AC005695.3-201ENST00000614522 232 ntBASIC15.82■□□□□ 0.12
CHFRQ96EP1 ETV2-208ENST00000621247 941 ntTSL 5 BASIC15.82■□□□□ 0.12
CHFRQ96EP1 AC132938.4-201ENST00000623835 848 ntBASIC15.82■□□□□ 0.12
CHFRQ96EP1 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
CHFRQ96EP1 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHFRQ96EP1 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHFRQ96EP1 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CHFRQ96EP1 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CHFRQ96EP1 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CHFRQ96EP1 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CHFRQ96EP1 MTHFR-217ENST00000641820 1569 ntBASIC15.82■□□□□ 0.12
CHFRQ96EP1 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC15.82■□□□□ 0.12
CHFRQ96EP1 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHFRQ96EP1 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHFRQ96EP1 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC15.82■□□□□ 0.12
CHFRQ96EP1 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHFRQ96EP1 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC15.82■□□□□ 0.12
CHFRQ96EP1 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHFRQ96EP1 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
CHFRQ96EP1 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHFRQ96EP1 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHFRQ96EP1 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHFRQ96EP1 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC15.81■□□□□ 0.12
CHFRQ96EP1 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHFRQ96EP1 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHFRQ96EP1 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHFRQ96EP1 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHFRQ96EP1 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CHFRQ96EP1 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHFRQ96EP1 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CHFRQ96EP1 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHFRQ96EP1 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHFRQ96EP1 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CHFRQ96EP1 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHFRQ96EP1 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHFRQ96EP1 AGER-203ENST00000375065 665 ntTSL 2 BASIC15.81■□□□□ 0.12
CHFRQ96EP1 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHFRQ96EP1 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHFRQ96EP1 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CHFRQ96EP1 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHFRQ96EP1 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC15.81■□□□□ 0.12
CHFRQ96EP1 ACTBP8-201ENST00000403258 1108 ntBASIC15.81■□□□□ 0.12
CHFRQ96EP1 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
CHFRQ96EP1 MIR1202-201ENST00000408529 83 ntBASIC15.81■□□□□ 0.12
CHFRQ96EP1 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC15.81■□□□□ 0.12
CHFRQ96EP1 KLF2P2-201ENST00000416807 1039 ntBASIC15.81■□□□□ 0.12
CHFRQ96EP1 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CHFRQ96EP1 AHCYP2-201ENST00000430630 1300 ntBASIC15.81■□□□□ 0.12
CHFRQ96EP1 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC15.81■□□□□ 0.12
CHFRQ96EP1 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CHFRQ96EP1 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.81■□□□□ 0.12
CHFRQ96EP1 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CHFRQ96EP1 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CHFRQ96EP1 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CHFRQ96EP1 ACR-203ENST00000529621 708 ntTSL 5 BASIC15.81■□□□□ 0.12
CHFRQ96EP1 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHFRQ96EP1 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC15.81■□□□□ 0.12
CHFRQ96EP1 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC15.81■□□□□ 0.12
CHFRQ96EP1 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHFRQ96EP1 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CHFRQ96EP1 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.81■□□□□ 0.12
CHFRQ96EP1 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CHFRQ96EP1 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHFRQ96EP1 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHFRQ96EP1 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CHFRQ96EP1 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CHFRQ96EP1 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CHFRQ96EP1 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 111 ms