Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 AL603832.2-201ENST00000566195 2125 ntBASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 AL138799.1-201ENST00000448213 1675 ntBASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 AC026954.1-201ENST00000429771 1293 ntBASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 PACS1-203ENST00000524815 628 ntTSL 4 BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 KRT90P-201ENST00000549264 1064 ntBASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RNFT1Q5M7Z0 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 PKD1P5-201ENST00000532415 10291 ntBASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 TKT-202ENST00000423516 2075 ntTSL 2 BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 MPV17-206ENST00000402722 827 ntTSL 3 BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 ACTBP11-201ENST00000436287 1126 ntBASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 AC084866.2-201ENST00000509956 449 ntTSL 2 BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNFT1Q5M7Z0 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms