Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 AL451050.2-201ENST00000606967 682 ntBASIC16.5■□□□□ 0.23
RB1P06400 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
RB1P06400 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RB1P06400 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.5■□□□□ 0.23
RB1P06400 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
RB1P06400 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.5■□□□□ 0.23
RB1P06400 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.5■□□□□ 0.23
RB1P06400 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC16.5■□□□□ 0.23
RB1P06400 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RB1P06400 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
RB1P06400 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
RB1P06400 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RB1P06400 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC16.5■□□□□ 0.23
RB1P06400 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.5■□□□□ 0.23
RB1P06400 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RB1P06400 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
RB1P06400 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
RB1P06400 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RB1P06400 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RB1P06400 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
RB1P06400 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
RB1P06400 AC012313.1-201ENST00000593393 3059 ntBASIC16.49■□□□□ 0.23
RB1P06400 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RB1P06400 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
RB1P06400 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RB1P06400 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
RB1P06400 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.49■□□□□ 0.23
RB1P06400 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC16.49■□□□□ 0.23
RB1P06400 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
RB1P06400 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
RB1P06400 RPS15-201ENST00000233609 534 ntTSL 2 BASIC16.49■□□□□ 0.23
RB1P06400 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RB1P06400 RNU1-114P-201ENST00000365297 166 ntBASIC16.49■□□□□ 0.23
RB1P06400 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RB1P06400 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
RB1P06400 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC16.49■□□□□ 0.23
RB1P06400 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RB1P06400 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC16.49■□□□□ 0.23
RB1P06400 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC16.49■□□□□ 0.23
RB1P06400 AL023775.1-201ENST00000454907 1746 ntBASIC16.49■□□□□ 0.23
RB1P06400 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC16.49■□□□□ 0.23
RB1P06400 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RB1P06400 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RB1P06400 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RB1P06400 RPS15-205ENST00000586686 562 ntTSL 5 BASIC16.49■□□□□ 0.23
RB1P06400 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC16.49■□□□□ 0.23
RB1P06400 RPS15-208ENST00000591804 711 ntTSL 5 BASIC16.49■□□□□ 0.23
RB1P06400 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
RB1P06400 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
RB1P06400 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RB1P06400 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RB1P06400 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RB1P06400 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RB1P06400 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.48■□□□□ 0.23
RB1P06400 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.48■□□□□ 0.23
RB1P06400 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RB1P06400 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RB1P06400 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RB1P06400 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC16.48■□□□□ 0.23
RB1P06400 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RB1P06400 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC16.48■□□□□ 0.23
RB1P06400 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
RB1P06400 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC16.48■□□□□ 0.23
RB1P06400 MIR769-201ENST00000390225 118 ntBASIC16.48■□□□□ 0.23
RB1P06400 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RB1P06400 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RB1P06400 NDUFAB1P1-201ENST00000404262 460 ntBASIC16.48■□□□□ 0.23
RB1P06400 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC16.48■□□□□ 0.23
RB1P06400 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC16.48■□□□□ 0.23
RB1P06400 HINT2P1-201ENST00000419438 481 ntBASIC16.48■□□□□ 0.23
RB1P06400 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.48■□□□□ 0.23
RB1P06400 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC16.48■□□□□ 0.23
RB1P06400 CHMP4BP1-201ENST00000556017 588 ntBASIC16.48■□□□□ 0.23
RB1P06400 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
RB1P06400 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC16.48■□□□□ 0.23
RB1P06400 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RB1P06400 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC16.48■□□□□ 0.23
RB1P06400 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC16.48■□□□□ 0.23
RB1P06400 AC007663.3-201ENST00000609632 465 ntBASIC16.48■□□□□ 0.23
RB1P06400 ENPP7P14-201ENST00000621765 1040 ntBASIC16.48■□□□□ 0.23
RB1P06400 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC16.48■□□□□ 0.23
RB1P06400 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC16.48■□□□□ 0.23
RB1P06400 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RB1P06400 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RB1P06400 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
RB1P06400 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
RB1P06400 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
RB1P06400 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.48■□□□□ 0.23
RB1P06400 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
RB1P06400 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RB1P06400 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.48■□□□□ 0.23
RB1P06400 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RB1P06400 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RB1P06400 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RB1P06400 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
RB1P06400 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
RB1P06400 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.48■□□□□ 0.23
RB1P06400 LRRFIP1P1-201ENST00000498774 2246 ntBASIC16.47■□□□□ 0.23
RB1P06400 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
RB1P06400 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms