Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Gm12504-201ENSMUST00000120860 2231 ntBASIC23.36■■□□□ 1.33
Trim9Q8C7M3 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
Trim9Q8C7M3 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
Trim9Q8C7M3 AC164883.3-201ENSMUST00000227396 1774 ntBASIC23.35■■□□□ 1.33
Trim9Q8C7M3 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Trim9Q8C7M3 Gm8093-201ENSMUST00000128935 1892 ntBASIC23.35■■□□□ 1.33
Trim9Q8C7M3 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC23.35■■□□□ 1.33
Trim9Q8C7M3 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC23.35■■□□□ 1.33
Trim9Q8C7M3 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC23.35■■□□□ 1.33
Trim9Q8C7M3 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Trim9Q8C7M3 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Trim9Q8C7M3 Gm43566-201ENSMUST00000196851 808 ntBASIC23.34■■□□□ 1.33
Trim9Q8C7M3 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC23.34■■□□□ 1.33
Trim9Q8C7M3 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
Trim9Q8C7M3 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Trim9Q8C7M3 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
Trim9Q8C7M3 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC23.33■■□□□ 1.33
Trim9Q8C7M3 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
Trim9Q8C7M3 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
Trim9Q8C7M3 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC23.33■■□□□ 1.32
Trim9Q8C7M3 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC23.32■■□□□ 1.32
Trim9Q8C7M3 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Trim9Q8C7M3 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC23.32■■□□□ 1.32
Trim9Q8C7M3 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
Trim9Q8C7M3 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Trim9Q8C7M3 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
Trim9Q8C7M3 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Trim9Q8C7M3 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Trim9Q8C7M3 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Trim9Q8C7M3 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
Trim9Q8C7M3 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
Trim9Q8C7M3 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
Trim9Q8C7M3 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Trim9Q8C7M3 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Trim9Q8C7M3 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Trim9Q8C7M3 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC23.3■■□□□ 1.32
Trim9Q8C7M3 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Trim9Q8C7M3 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Trim9Q8C7M3 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC23.29■■□□□ 1.32
Trim9Q8C7M3 Gm6277-202ENSMUST00000224036 2779 ntBASIC23.29■■□□□ 1.32
Trim9Q8C7M3 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Trim9Q8C7M3 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Trim9Q8C7M3 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Trim9Q8C7M3 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Trim9Q8C7M3 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC23.28■■□□□ 1.32
Trim9Q8C7M3 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Trim9Q8C7M3 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Trim9Q8C7M3 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Trim9Q8C7M3 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC23.27■■□□□ 1.32
Trim9Q8C7M3 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC23.27■■□□□ 1.32
Trim9Q8C7M3 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Trim9Q8C7M3 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.31
Trim9Q8C7M3 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Trim9Q8C7M3 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Trim9Q8C7M3 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Trim9Q8C7M3 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Trim9Q8C7M3 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Trim9Q8C7M3 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Trim9Q8C7M3 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC23.25■■□□□ 1.31
Trim9Q8C7M3 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Trim9Q8C7M3 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC23.25■■□□□ 1.31
Trim9Q8C7M3 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Trim9Q8C7M3 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Trim9Q8C7M3 Gm16464-201ENSMUST00000117815 1095 ntBASIC23.25■■□□□ 1.31
Trim9Q8C7M3 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
Trim9Q8C7M3 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Trim9Q8C7M3 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC23.25■■□□□ 1.31
Trim9Q8C7M3 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Trim9Q8C7M3 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC23.24■■□□□ 1.31
Trim9Q8C7M3 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC23.24■■□□□ 1.31
Trim9Q8C7M3 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Trim9Q8C7M3 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Trim9Q8C7M3 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Trim9Q8C7M3 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
Trim9Q8C7M3 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Trim9Q8C7M3 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
Trim9Q8C7M3 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Trim9Q8C7M3 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
Trim9Q8C7M3 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC23.23■■□□□ 1.31
Trim9Q8C7M3 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Trim9Q8C7M3 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Trim9Q8C7M3 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
Trim9Q8C7M3 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
Trim9Q8C7M3 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Trim9Q8C7M3 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Trim9Q8C7M3 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Trim9Q8C7M3 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
Trim9Q8C7M3 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Trim9Q8C7M3 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC23.22■■□□□ 1.31
Trim9Q8C7M3 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Trim9Q8C7M3 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC23.22■■□□□ 1.31
Trim9Q8C7M3 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC23.21■■□□□ 1.31
Trim9Q8C7M3 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Trim9Q8C7M3 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
Trim9Q8C7M3 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Trim9Q8C7M3 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Trim9Q8C7M3 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Trim9Q8C7M3 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
Trim9Q8C7M3 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Trim9Q8C7M3 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms