Protein–RNA interactions for Protein: Q3UNC9

Cks1brt, Cyclin-dependent kinases regulatory subunit, mousemouse

Predictions only

Length 96 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cks1brtQ3UNC9 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cks1brtQ3UNC9 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cks1brtQ3UNC9 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cks1brtQ3UNC9 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Cks1brtQ3UNC9 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cks1brtQ3UNC9 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cks1brtQ3UNC9 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cks1brtQ3UNC9 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cks1brtQ3UNC9 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Cks1brtQ3UNC9 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Cks1brtQ3UNC9 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cks1brtQ3UNC9 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC15.23■□□□□ 0.03
Cks1brtQ3UNC9 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC15.23■□□□□ 0.03
Cks1brtQ3UNC9 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Cks1brtQ3UNC9 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cks1brtQ3UNC9 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cks1brtQ3UNC9 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cks1brtQ3UNC9 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cks1brtQ3UNC9 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cks1brtQ3UNC9 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cks1brtQ3UNC9 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cks1brtQ3UNC9 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cks1brtQ3UNC9 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
Cks1brtQ3UNC9 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Cks1brtQ3UNC9 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC15.22■□□□□ 0.03
Cks1brtQ3UNC9 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Cks1brtQ3UNC9 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC15.22■□□□□ 0.03
Cks1brtQ3UNC9 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cks1brtQ3UNC9 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cks1brtQ3UNC9 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC15.21■□□□□ 0.03
Cks1brtQ3UNC9 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
Cks1brtQ3UNC9 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Cks1brtQ3UNC9 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
Cks1brtQ3UNC9 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cks1brtQ3UNC9 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cks1brtQ3UNC9 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Cks1brtQ3UNC9 AC157572.2-201ENSMUST00000226970 908 ntBASIC15.2■□□□□ 0.02
Cks1brtQ3UNC9 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC15.2■□□□□ 0.02
Cks1brtQ3UNC9 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
Cks1brtQ3UNC9 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cks1brtQ3UNC9 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cks1brtQ3UNC9 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cks1brtQ3UNC9 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Cks1brtQ3UNC9 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Cks1brtQ3UNC9 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Cks1brtQ3UNC9 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cks1brtQ3UNC9 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Cks1brtQ3UNC9 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Cks1brtQ3UNC9 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Cks1brtQ3UNC9 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Cks1brtQ3UNC9 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Cks1brtQ3UNC9 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Cks1brtQ3UNC9 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
Cks1brtQ3UNC9 Gm43863-201ENSMUST00000203822 1192 ntBASIC15.18■□□□□ 0.02
Cks1brtQ3UNC9 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Cks1brtQ3UNC9 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Cks1brtQ3UNC9 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC15.18■□□□□ 0.02
Cks1brtQ3UNC9 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Cks1brtQ3UNC9 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC15.18■□□□□ 0.02
Cks1brtQ3UNC9 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Cks1brtQ3UNC9 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Cks1brtQ3UNC9 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
Cks1brtQ3UNC9 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cks1brtQ3UNC9 Gm10616-201ENSMUST00000205285 2127 ntBASIC15.17■□□□□ 0.02
Cks1brtQ3UNC9 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Cks1brtQ3UNC9 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cks1brtQ3UNC9 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cks1brtQ3UNC9 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cks1brtQ3UNC9 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC15.16■□□□□ 0.02
Cks1brtQ3UNC9 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
Cks1brtQ3UNC9 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cks1brtQ3UNC9 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cks1brtQ3UNC9 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cks1brtQ3UNC9 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Cks1brtQ3UNC9 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Cks1brtQ3UNC9 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Cks1brtQ3UNC9 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cks1brtQ3UNC9 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cks1brtQ3UNC9 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
Cks1brtQ3UNC9 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cks1brtQ3UNC9 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cks1brtQ3UNC9 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cks1brtQ3UNC9 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Cks1brtQ3UNC9 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Cks1brtQ3UNC9 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cks1brtQ3UNC9 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Cks1brtQ3UNC9 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cks1brtQ3UNC9 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cks1brtQ3UNC9 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cks1brtQ3UNC9 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cks1brtQ3UNC9 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cks1brtQ3UNC9 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cks1brtQ3UNC9 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
Cks1brtQ3UNC9 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC15.14■□□□□ 0.01
Cks1brtQ3UNC9 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cks1brtQ3UNC9 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cks1brtQ3UNC9 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cks1brtQ3UNC9 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cks1brtQ3UNC9 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cks1brtQ3UNC9 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms