Protein–RNA interactions for Protein: P50220

Nkx2-1, Homeobox protein Nkx-2.1, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-1P50220 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
Nkx2-1P50220 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC17.34■□□□□ 0.37
Nkx2-1P50220 AC167019.3-201ENSMUST00000228225 1266 ntBASIC17.34■□□□□ 0.37
Nkx2-1P50220 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx2-1P50220 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx2-1P50220 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx2-1P50220 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx2-1P50220 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx2-1P50220 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx2-1P50220 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx2-1P50220 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Nkx2-1P50220 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Nkx2-1P50220 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
Nkx2-1P50220 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Nkx2-1P50220 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC17.33■□□□□ 0.36
Nkx2-1P50220 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
Nkx2-1P50220 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
Nkx2-1P50220 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Nkx2-1P50220 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Nkx2-1P50220 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nkx2-1P50220 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nkx2-1P50220 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Nkx2-1P50220 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Nkx2-1P50220 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Nkx2-1P50220 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nkx2-1P50220 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Nkx2-1P50220 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nkx2-1P50220 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nkx2-1P50220 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nkx2-1P50220 Kdm3b-204ENSMUST00000224715 2032 ntBASIC17.31■□□□□ 0.36
Nkx2-1P50220 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nkx2-1P50220 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nkx2-1P50220 Gm43403-201ENSMUST00000198011 1786 ntBASIC17.31■□□□□ 0.36
Nkx2-1P50220 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC17.31■□□□□ 0.36
Nkx2-1P50220 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC17.31■□□□□ 0.36
Nkx2-1P50220 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Nkx2-1P50220 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nkx2-1P50220 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nkx2-1P50220 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nkx2-1P50220 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nkx2-1P50220 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nkx2-1P50220 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nkx2-1P50220 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nkx2-1P50220 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Nkx2-1P50220 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nkx2-1P50220 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nkx2-1P50220 Gm45364-201ENSMUST00000210883 159 ntBASIC17.29■□□□□ 0.36
Nkx2-1P50220 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Nkx2-1P50220 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nkx2-1P50220 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nkx2-1P50220 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Nkx2-1P50220 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nkx2-1P50220 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nkx2-1P50220 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nkx2-1P50220 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Nkx2-1P50220 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC17.27■□□□□ 0.36
Nkx2-1P50220 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Nkx2-1P50220 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Nkx2-1P50220 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Nkx2-1P50220 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Nkx2-1P50220 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Nkx2-1P50220 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
Nkx2-1P50220 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
Nkx2-1P50220 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Nkx2-1P50220 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nkx2-1P50220 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nkx2-1P50220 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC17.26■□□□□ 0.35
Nkx2-1P50220 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nkx2-1P50220 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nkx2-1P50220 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Nkx2-1P50220 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Nkx2-1P50220 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC17.25■□□□□ 0.35
Nkx2-1P50220 Pkd1-207ENSMUST00000228550 1050 ntBASIC17.25■□□□□ 0.35
Nkx2-1P50220 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Nkx2-1P50220 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nkx2-1P50220 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nkx2-1P50220 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nkx2-1P50220 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nkx2-1P50220 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Nkx2-1P50220 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nkx2-1P50220 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Nkx2-1P50220 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nkx2-1P50220 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx2-1P50220 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx2-1P50220 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Nkx2-1P50220 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx2-1P50220 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC17.24■□□□□ 0.35
Nkx2-1P50220 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx2-1P50220 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx2-1P50220 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx2-1P50220 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx2-1P50220 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
Nkx2-1P50220 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nkx2-1P50220 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nkx2-1P50220 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC17.23■□□□□ 0.35
Nkx2-1P50220 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Nkx2-1P50220 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC17.23■□□□□ 0.35
Nkx2-1P50220 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Nkx2-1P50220 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nkx2-1P50220 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 14.1 ms