Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 AL162726.2-201ENST00000438986 1017 ntBASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 CTBP2P5-201ENST00000454986 1264 ntBASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 AL359711.2-201ENST00000563105 872 ntBASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 BRI3BPP1-201ENST00000594224 787 ntBASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 AL118508.1-201ENST00000613502 2345 ntBASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 ANKRD19P-201ENST00000338192 862 ntBASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 AC092933.1-201ENST00000393644 945 ntBASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 AC134915.1-201ENST00000426461 574 ntBASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 PARP8-218ENST00000513738 596 ntTSL 4 BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 MIR6869-201ENST00000619434 62 ntBASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 ABBA01031660.1-201ENST00000635219 756 ntBASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 AC008894.3-201ENST00000624324 3103 ntBASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 AC011477.6-201ENST00000604980 1927 ntBASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDDC3Q8N4P3 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HDDC3Q8N4P3 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDDC3Q8N4P3 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.79■□□□□ 0.12
HDDC3Q8N4P3 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDDC3Q8N4P3 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HDDC3Q8N4P3 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDDC3Q8N4P3 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDDC3Q8N4P3 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
HDDC3Q8N4P3 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDDC3Q8N4P3 AMT-232ENST00000636199 1546 ntTSL 5 BASIC15.79■□□□□ 0.12
HDDC3Q8N4P3 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDDC3Q8N4P3 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HDDC3Q8N4P3 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC15.79■□□□□ 0.12
HDDC3Q8N4P3 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms