Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
HNF4AP41235 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.39■□□□□ 0.05
HNF4AP41235 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC15.39■□□□□ 0.05
HNF4AP41235 RAC2-202ENST00000401529 569 ntTSL 4 BASIC15.39■□□□□ 0.05
HNF4AP41235 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC15.39■□□□□ 0.05
HNF4AP41235 MTND6P24-201ENST00000440466 518 ntBASIC15.39■□□□□ 0.05
HNF4AP41235 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC15.39■□□□□ 0.05
HNF4AP41235 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HNF4AP41235 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.39■□□□□ 0.05
HNF4AP41235 VPS29-207ENST00000549970 818 ntTSL 3 BASIC15.39■□□□□ 0.05
HNF4AP41235 AL450472.2-201ENST00000603663 1156 ntBASIC15.39■□□□□ 0.05
HNF4AP41235 AP001059.3-201ENST00000619053 235 ntBASIC15.39■□□□□ 0.05
HNF4AP41235 Z92544.3-201ENST00000624747 417 ntBASIC15.39■□□□□ 0.05
HNF4AP41235 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.39■□□□□ 0.05
HNF4AP41235 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.39■□□□□ 0.05
HNF4AP41235 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
HNF4AP41235 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HNF4AP41235 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HNF4AP41235 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC15.39■□□□□ 0.05
HNF4AP41235 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
HNF4AP41235 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HNF4AP41235 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HNF4AP41235 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
HNF4AP41235 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.38■□□□□ 0.05
HNF4AP41235 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
HNF4AP41235 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.38■□□□□ 0.05
HNF4AP41235 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC15.38■□□□□ 0.05
HNF4AP41235 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
HNF4AP41235 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
HNF4AP41235 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HNF4AP41235 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
HNF4AP41235 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC15.38■□□□□ 0.05
HNF4AP41235 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC15.38■□□□□ 0.05
HNF4AP41235 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
HNF4AP41235 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HNF4AP41235 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.38■□□□□ 0.05
HNF4AP41235 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HNF4AP41235 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
HNF4AP41235 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HNF4AP41235 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HNF4AP41235 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
HNF4AP41235 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC15.38■□□□□ 0.05
HNF4AP41235 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC15.38■□□□□ 0.05
HNF4AP41235 PHKG1P2-201ENST00000457537 863 ntBASIC15.38■□□□□ 0.05
HNF4AP41235 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.38■□□□□ 0.05
HNF4AP41235 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC15.38■□□□□ 0.05
HNF4AP41235 AC025678.2-201ENST00000562061 970 ntBASIC15.38■□□□□ 0.05
HNF4AP41235 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC15.38■□□□□ 0.05
HNF4AP41235 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.38■□□□□ 0.05
HNF4AP41235 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC15.38■□□□□ 0.05
HNF4AP41235 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC15.38■□□□□ 0.05
HNF4AP41235 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HNF4AP41235 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HNF4AP41235 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
HNF4AP41235 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
HNF4AP41235 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HNF4AP41235 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HNF4AP41235 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HNF4AP41235 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
HNF4AP41235 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HNF4AP41235 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HNF4AP41235 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
HNF4AP41235 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HNF4AP41235 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HNF4AP41235 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
HNF4AP41235 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.37■□□□□ 0.05
HNF4AP41235 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
HNF4AP41235 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC15.37■□□□□ 0.05
HNF4AP41235 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.37■□□□□ 0.05
HNF4AP41235 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.37■□□□□ 0.05
HNF4AP41235 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.37■□□□□ 0.05
HNF4AP41235 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
HNF4AP41235 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC15.37■□□□□ 0.05
HNF4AP41235 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
HNF4AP41235 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.37■□□□□ 0.05
HNF4AP41235 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC15.37■□□□□ 0.05
HNF4AP41235 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
HNF4AP41235 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC15.37■□□□□ 0.05
HNF4AP41235 SPDYE7P-202ENST00000420373 878 ntBASIC15.37■□□□□ 0.05
HNF4AP41235 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.37■□□□□ 0.05
HNF4AP41235 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.37■□□□□ 0.05
HNF4AP41235 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HNF4AP41235 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.37■□□□□ 0.05
HNF4AP41235 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.37■□□□□ 0.05
HNF4AP41235 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC15.37■□□□□ 0.05
HNF4AP41235 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC15.37■□□□□ 0.05
HNF4AP41235 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC15.37■□□□□ 0.05
HNF4AP41235 AC105021.1-202ENST00000570572 669 ntBASIC15.37■□□□□ 0.05
HNF4AP41235 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC15.37■□□□□ 0.05
HNF4AP41235 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HNF4AP41235 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC15.37■□□□□ 0.05
HNF4AP41235 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
HNF4AP41235 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
HNF4AP41235 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HNF4AP41235 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.37■□□□□ 0.05
HNF4AP41235 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HNF4AP41235 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HNF4AP41235 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HNF4AP41235 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HNF4AP41235 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms