Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
CIITAP33076 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
CIITAP33076 AC105250.1-201ENST00000509378 2057 ntBASIC17.73■□□□□ 0.43
CIITAP33076 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CIITAP33076 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CIITAP33076 CICP13-201ENST00000422015 2789 ntBASIC17.73■□□□□ 0.43
CIITAP33076 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CIITAP33076 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CIITAP33076 AC092127.1-201ENST00000567093 3455 ntBASIC17.72■□□□□ 0.43
CIITAP33076 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CIITAP33076 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.72■□□□□ 0.43
CIITAP33076 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.72■□□□□ 0.43
CIITAP33076 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CIITAP33076 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
CIITAP33076 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CIITAP33076 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CIITAP33076 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC17.72■□□□□ 0.43
CIITAP33076 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CIITAP33076 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CIITAP33076 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CIITAP33076 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CIITAP33076 METTL26-204ENST00000397665 558 ntTSL 2 BASIC17.72■□□□□ 0.43
CIITAP33076 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CIITAP33076 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC17.72■□□□□ 0.43
CIITAP33076 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC17.72■□□□□ 0.43
CIITAP33076 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC17.72■□□□□ 0.43
CIITAP33076 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC17.72■□□□□ 0.43
CIITAP33076 AL596325.1-201ENST00000563991 1082 ntBASIC17.72■□□□□ 0.43
CIITAP33076 CTBP2P3-201ENST00000585629 1255 ntBASIC17.72■□□□□ 0.43
CIITAP33076 GPX4-206ENST00000588919 803 ntTSL 2 BASIC17.72■□□□□ 0.43
CIITAP33076 UBL5-208ENST00000593087 320 ntTSL 3 BASIC17.72■□□□□ 0.43
CIITAP33076 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC17.72■□□□□ 0.43
CIITAP33076 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC17.72■□□□□ 0.43
CIITAP33076 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
CIITAP33076 AC007950.2-201ENST00000615045 2347 ntBASIC17.72■□□□□ 0.43
CIITAP33076 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.72■□□□□ 0.43
CIITAP33076 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CIITAP33076 AMT-232ENST00000636199 1546 ntTSL 5 BASIC17.72■□□□□ 0.43
CIITAP33076 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CIITAP33076 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CIITAP33076 MFF-204ENST00000353339 2186 ntTSL 5 BASIC17.72■□□□□ 0.43
CIITAP33076 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CIITAP33076 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CIITAP33076 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CIITAP33076 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CIITAP33076 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
CIITAP33076 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CIITAP33076 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CIITAP33076 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CIITAP33076 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CIITAP33076 AC008894.3-201ENST00000624324 3103 ntBASIC17.71■□□□□ 0.43
CIITAP33076 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CIITAP33076 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CIITAP33076 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CIITAP33076 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CIITAP33076 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CIITAP33076 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CIITAP33076 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC17.71■□□□□ 0.43
CIITAP33076 AL442647.2-201ENST00000429864 857 ntBASIC17.71■□□□□ 0.43
CIITAP33076 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC17.71■□□□□ 0.43
CIITAP33076 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CIITAP33076 AC104596.2-201ENST00000512793 793 ntBASIC17.71■□□□□ 0.43
CIITAP33076 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CIITAP33076 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CIITAP33076 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC17.71■□□□□ 0.43
CIITAP33076 TBCB-211ENST00000589996 724 ntTSL 3 BASIC17.71■□□□□ 0.43
CIITAP33076 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CIITAP33076 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
CIITAP33076 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CIITAP33076 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CIITAP33076 POLL-217ENST00000628479 1953 ntTSL 5 BASIC17.71■□□□□ 0.43
CIITAP33076 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CIITAP33076 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CIITAP33076 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CIITAP33076 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC17.71■□□□□ 0.43
CIITAP33076 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CIITAP33076 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CIITAP33076 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CIITAP33076 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CIITAP33076 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CIITAP33076 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CIITAP33076 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CIITAP33076 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CIITAP33076 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CIITAP33076 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC17.7■□□□□ 0.42
CIITAP33076 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CIITAP33076 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CIITAP33076 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC17.7■□□□□ 0.42
CIITAP33076 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CIITAP33076 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CIITAP33076 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CIITAP33076 AC098614.1-201ENST00000368528 745 ntBASIC17.7■□□□□ 0.42
CIITAP33076 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CIITAP33076 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC17.7■□□□□ 0.42
CIITAP33076 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC17.7■□□□□ 0.42
CIITAP33076 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CIITAP33076 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC17.7■□□□□ 0.42
CIITAP33076 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC17.7■□□□□ 0.42
CIITAP33076 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CIITAP33076 GAPDHP40-201ENST00000505218 1006 ntBASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms