Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cln3Q61124 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Cln3Q61124 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cln3Q61124 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Cln3Q61124 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cln3Q61124 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cln3Q61124 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cln3Q61124 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cln3Q61124 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Cln3Q61124 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cln3Q61124 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cln3Q61124 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cln3Q61124 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC13.98□□□□□ -0.17
Cln3Q61124 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cln3Q61124 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Cln3Q61124 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cln3Q61124 Gm42769-201ENSMUST00000198576 1659 ntBASIC13.98□□□□□ -0.17
Cln3Q61124 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Cln3Q61124 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cln3Q61124 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cln3Q61124 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Cln3Q61124 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cln3Q61124 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cln3Q61124 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Cln3Q61124 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Cln3Q61124 Cd27-203ENSMUST00000112282 588 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Cln3Q61124 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC13.98□□□□□ -0.17
Cln3Q61124 Mir1943-201ENSMUST00000158276 73 ntBASIC13.98□□□□□ -0.17
Cln3Q61124 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC13.98□□□□□ -0.17
Cln3Q61124 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC13.98□□□□□ -0.17
Cln3Q61124 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC13.98□□□□□ -0.17
Cln3Q61124 AU022133-201ENSMUST00000200601 873 ntBASIC13.98□□□□□ -0.17
Cln3Q61124 Gm19187-201ENSMUST00000206781 892 ntBASIC13.98□□□□□ -0.17
Cln3Q61124 Cacng1-201ENSMUST00000021065 1249 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cln3Q61124 1700027J07Rik-202ENSMUST00000215747 1060 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Cln3Q61124 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cln3Q61124 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cln3Q61124 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Cln3Q61124 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cln3Q61124 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cln3Q61124 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cln3Q61124 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC13.98□□□□□ -0.17
Cln3Q61124 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cln3Q61124 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Cln3Q61124 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Cln3Q61124 Gm38391-201ENSMUST00000191720 4069 ntBASIC13.98□□□□□ -0.17
Cln3Q61124 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cln3Q61124 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cln3Q61124 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Cln3Q61124 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Cln3Q61124 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Cln3Q61124 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
Cln3Q61124 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC13.97□□□□□ -0.17
Cln3Q61124 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC13.97□□□□□ -0.17
Cln3Q61124 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Cln3Q61124 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Cln3Q61124 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cln3Q61124 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cln3Q61124 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cln3Q61124 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cln3Q61124 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cln3Q61124 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cln3Q61124 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Cln3Q61124 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Cln3Q61124 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Cln3Q61124 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
Cln3Q61124 Gm15703-201ENSMUST00000120250 880 ntBASIC13.97□□□□□ -0.17
Cln3Q61124 Gm12266-201ENSMUST00000120311 962 ntBASIC13.97□□□□□ -0.17
Cln3Q61124 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC13.97□□□□□ -0.17
Cln3Q61124 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC13.97□□□□□ -0.17
Cln3Q61124 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC13.97□□□□□ -0.17
Cln3Q61124 Gm9555-201ENSMUST00000200908 583 ntBASIC13.97□□□□□ -0.17
Cln3Q61124 Gm7848-201ENSMUST00000210739 718 ntBASIC13.97□□□□□ -0.17
Cln3Q61124 Gm18730-201ENSMUST00000218038 343 ntBASIC13.97□□□□□ -0.17
Cln3Q61124 Gm21027-201ENSMUST00000219300 1236 ntBASIC13.97□□□□□ -0.17
Cln3Q61124 AC159205.5-202ENSMUST00000224849 386 ntBASIC13.97□□□□□ -0.17
Cln3Q61124 C1qb-201ENSMUST00000046384 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cln3Q61124 Rpl34-202ENSMUST00000079085 480 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cln3Q61124 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Cln3Q61124 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cln3Q61124 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cln3Q61124 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Cln3Q61124 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC13.97□□□□□ -0.17
Cln3Q61124 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cln3Q61124 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cln3Q61124 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cln3Q61124 Abhd6-201ENSMUST00000026313 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cln3Q61124 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cln3Q61124 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cln3Q61124 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cln3Q61124 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cln3Q61124 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Cln3Q61124 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC13.96□□□□□ -0.17
Cln3Q61124 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC13.96□□□□□ -0.17
Cln3Q61124 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Cln3Q61124 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Cln3Q61124 Gm29590-201ENSMUST00000190396 1304 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Cln3Q61124 Fam170a-201ENSMUST00000039121 1342 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Cln3Q61124 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
Cln3Q61124 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 40.6 ms