Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
COL12A1Q99715 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC13.65□□□□□ -0.22
COL12A1Q99715 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC13.65□□□□□ -0.22
COL12A1Q99715 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC13.65□□□□□ -0.22
COL12A1Q99715 AL805961.1-203ENST00000641078 1258 ntBASIC13.65□□□□□ -0.22
COL12A1Q99715 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL12A1Q99715 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
COL12A1Q99715 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL12A1Q99715 GNE-204ENST00000539208 2190 ntTSL 2 BASIC13.65□□□□□ -0.22
COL12A1Q99715 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL12A1Q99715 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL12A1Q99715 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL12A1Q99715 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC13.65□□□□□ -0.22
COL12A1Q99715 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC13.65□□□□□ -0.22
COL12A1Q99715 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC13.65□□□□□ -0.22
COL12A1Q99715 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL12A1Q99715 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL12A1Q99715 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
COL12A1Q99715 NOC2LP1-201ENST00000450578 752 ntBASIC13.65□□□□□ -0.23
COL12A1Q99715 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.23
COL12A1Q99715 NCK2-206ENST00000522586 490 ntTSL 5 BASIC13.65□□□□□ -0.23
COL12A1Q99715 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
COL12A1Q99715 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC13.65□□□□□ -0.23
COL12A1Q99715 C2orf69P1-201ENST00000563532 1093 ntBASIC13.65□□□□□ -0.23
COL12A1Q99715 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC13.65□□□□□ -0.23
COL12A1Q99715 AC105137.3-201ENST00000617588 984 ntBASIC13.65□□□□□ -0.23
COL12A1Q99715 CAP2P1-201ENST00000557743 1390 ntBASIC13.65□□□□□ -0.23
COL12A1Q99715 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
COL12A1Q99715 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL12A1Q99715 AL121723.1-201ENST00000445194 1519 ntBASIC13.64□□□□□ -0.23
COL12A1Q99715 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL12A1Q99715 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL12A1Q99715 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL12A1Q99715 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC13.64□□□□□ -0.23
COL12A1Q99715 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
COL12A1Q99715 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL12A1Q99715 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL12A1Q99715 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC13.64□□□□□ -0.23
COL12A1Q99715 BNIP3P13-201ENST00000599968 566 ntBASIC13.64□□□□□ -0.23
COL12A1Q99715 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC13.64□□□□□ -0.23
COL12A1Q99715 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC13.64□□□□□ -0.23
COL12A1Q99715 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC13.64□□□□□ -0.23
COL12A1Q99715 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
COL12A1Q99715 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL12A1Q99715 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL12A1Q99715 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL12A1Q99715 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
COL12A1Q99715 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC13.64□□□□□ -0.23
COL12A1Q99715 AC136604.1-201ENST00000418535 575 ntBASIC13.64□□□□□ -0.23
COL12A1Q99715 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC13.64□□□□□ -0.23
COL12A1Q99715 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL12A1Q99715 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
COL12A1Q99715 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC13.64□□□□□ -0.23
COL12A1Q99715 AC103988.2-201ENST00000561804 725 ntBASIC13.64□□□□□ -0.23
COL12A1Q99715 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC13.64□□□□□ -0.23
COL12A1Q99715 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC13.64□□□□□ -0.23
COL12A1Q99715 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL12A1Q99715 AC004923.1-202ENST00000642106 209 ntBASIC13.64□□□□□ -0.23
COL12A1Q99715 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
COL12A1Q99715 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL12A1Q99715 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL12A1Q99715 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL12A1Q99715 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL12A1Q99715 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC13.63□□□□□ -0.23
COL12A1Q99715 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL12A1Q99715 AC016396.2-201ENST00000562575 1417 ntBASIC13.63□□□□□ -0.23
COL12A1Q99715 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL12A1Q99715 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL12A1Q99715 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC13.63□□□□□ -0.23
COL12A1Q99715 SERBP1P2-201ENST00000436888 1164 ntBASIC13.63□□□□□ -0.23
COL12A1Q99715 SLED1-202ENST00000512051 380 ntBASIC13.63□□□□□ -0.23
COL12A1Q99715 AC015910.1-201ENST00000579400 975 ntBASIC13.63□□□□□ -0.23
COL12A1Q99715 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
COL12A1Q99715 AC107373.2-201ENST00000607735 490 ntBASIC13.63□□□□□ -0.23
COL12A1Q99715 AC051619.9-201ENST00000623237 597 ntBASIC13.63□□□□□ -0.23
COL12A1Q99715 AC132938.4-201ENST00000623835 848 ntBASIC13.63□□□□□ -0.23
COL12A1Q99715 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL12A1Q99715 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC13.63□□□□□ -0.23
COL12A1Q99715 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC13.63□□□□□ -0.23
COL12A1Q99715 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL12A1Q99715 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC13.63□□□□□ -0.23
COL12A1Q99715 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC13.63□□□□□ -0.23
COL12A1Q99715 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL12A1Q99715 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL12A1Q99715 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
COL12A1Q99715 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL12A1Q99715 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL12A1Q99715 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
COL12A1Q99715 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC13.63□□□□□ -0.23
COL12A1Q99715 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
COL12A1Q99715 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC13.63□□□□□ -0.23
COL12A1Q99715 FAM86KP-201ENST00000509817 987 ntBASIC13.63□□□□□ -0.23
COL12A1Q99715 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC13.63□□□□□ -0.23
COL12A1Q99715 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL12A1Q99715 AC124947.2-201ENST00000547118 1133 ntBASIC13.63□□□□□ -0.23
COL12A1Q99715 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC13.63□□□□□ -0.23
COL12A1Q99715 AC007718.1-201ENST00000621078 280 ntBASIC13.63□□□□□ -0.23
COL12A1Q99715 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL12A1Q99715 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC13.63□□□□□ -0.23
COL12A1Q99715 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms