Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC091046.1-201ENST00000331871 207 ntBASIC16.73■□□□□ 0.27
COL4A4P53420 AL662890.1-201ENST00000396818 632 ntBASIC16.73■□□□□ 0.27
COL4A4P53420 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC16.73■□□□□ 0.27
COL4A4P53420 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC16.73■□□□□ 0.27
COL4A4P53420 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL4A4P53420 AP001582.1-201ENST00000525856 295 ntBASIC16.73■□□□□ 0.27
COL4A4P53420 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL4A4P53420 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC16.73■□□□□ 0.27
COL4A4P53420 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC16.73■□□□□ 0.27
COL4A4P53420 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC16.73■□□□□ 0.27
COL4A4P53420 MIR4722-201ENST00000578292 60 ntBASIC16.73■□□□□ 0.27
COL4A4P53420 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
COL4A4P53420 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC16.73■□□□□ 0.27
COL4A4P53420 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL4A4P53420 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC16.73■□□□□ 0.27
COL4A4P53420 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.73■□□□□ 0.27
COL4A4P53420 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.73■□□□□ 0.27
COL4A4P53420 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC16.73■□□□□ 0.27
COL4A4P53420 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL4A4P53420 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.73■□□□□ 0.27
COL4A4P53420 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL4A4P53420 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL4A4P53420 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL4A4P53420 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC16.73■□□□□ 0.27
COL4A4P53420 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL4A4P53420 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL4A4P53420 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A4P53420 ZBTB45P2-201ENST00000452245 1531 ntBASIC16.72■□□□□ 0.27
COL4A4P53420 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A4P53420 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
COL4A4P53420 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A4P53420 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
COL4A4P53420 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC16.72■□□□□ 0.27
COL4A4P53420 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A4P53420 HOMER2P2-201ENST00000451621 847 ntBASIC16.72■□□□□ 0.27
COL4A4P53420 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A4P53420 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC16.72■□□□□ 0.27
COL4A4P53420 AC015910.1-201ENST00000579400 975 ntBASIC16.72■□□□□ 0.27
COL4A4P53420 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC16.72■□□□□ 0.27
COL4A4P53420 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC16.72■□□□□ 0.27
COL4A4P53420 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC16.72■□□□□ 0.27
COL4A4P53420 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A4P53420 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A4P53420 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC16.72■□□□□ 0.27
COL4A4P53420 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A4P53420 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
COL4A4P53420 TP73-209ENST00000603362 1668 ntTSL 5 BASIC16.72■□□□□ 0.27
COL4A4P53420 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A4P53420 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.72■□□□□ 0.27
COL4A4P53420 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A4P53420 LINC02447-202ENST00000501888 2146 ntBASIC16.72■□□□□ 0.27
COL4A4P53420 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A4P53420 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC16.72■□□□□ 0.27
COL4A4P53420 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.72■□□□□ 0.27
COL4A4P53420 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A4P53420 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A4P53420 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC16.72■□□□□ 0.27
COL4A4P53420 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
COL4A4P53420 AC253536.4-201ENST00000440539 267 ntBASIC16.72■□□□□ 0.27
COL4A4P53420 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A4P53420 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC16.72■□□□□ 0.27
COL4A4P53420 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC16.72■□□□□ 0.27
COL4A4P53420 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC16.72■□□□□ 0.27
COL4A4P53420 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC16.72■□□□□ 0.27
COL4A4P53420 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
COL4A4P53420 AL451050.2-201ENST00000606967 682 ntBASIC16.72■□□□□ 0.27
COL4A4P53420 AP001505.2-201ENST00000616815 443 ntBASIC16.72■□□□□ 0.27
COL4A4P53420 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC16.71■□□□□ 0.27
COL4A4P53420 FOS-202ENST00000535987 1402 ntTSL 2 BASIC16.71■□□□□ 0.27
COL4A4P53420 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL4A4P53420 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL4A4P53420 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC16.71■□□□□ 0.27
COL4A4P53420 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.71■□□□□ 0.27
COL4A4P53420 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL4A4P53420 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
COL4A4P53420 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL4A4P53420 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
COL4A4P53420 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
COL4A4P53420 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL4A4P53420 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC16.71■□□□□ 0.27
COL4A4P53420 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL4A4P53420 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL4A4P53420 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL4A4P53420 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL4A4P53420 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL4A4P53420 KRTAP10-13P-201ENST00000412914 571 ntBASIC16.71■□□□□ 0.27
COL4A4P53420 AC136604.1-201ENST00000418535 575 ntBASIC16.71■□□□□ 0.27
COL4A4P53420 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
COL4A4P53420 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
COL4A4P53420 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC16.71■□□□□ 0.27
COL4A4P53420 CYGB-203ENST00000589145 788 ntTSL 3 BASIC16.71■□□□□ 0.27
COL4A4P53420 ECM1P1-201ENST00000604092 1279 ntBASIC16.71■□□□□ 0.27
COL4A4P53420 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL4A4P53420 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC16.71■□□□□ 0.27
COL4A4P53420 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.71■□□□□ 0.26
COL4A4P53420 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
COL4A4P53420 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
COL4A4P53420 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC16.7■□□□□ 0.26
COL4A4P53420 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
COL4A4P53420 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms