Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
HLA-DMBP28068 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
HLA-DMBP28068 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC12.22□□□□□ -0.45
HLA-DMBP28068 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC12.22□□□□□ -0.45
HLA-DMBP28068 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC12.22□□□□□ -0.45
HLA-DMBP28068 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC12.22□□□□□ -0.45
HLA-DMBP28068 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC12.22□□□□□ -0.45
HLA-DMBP28068 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC12.21□□□□□ -0.45
HLA-DMBP28068 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DMBP28068 AC092127.1-201ENST00000567093 3455 ntBASIC12.21□□□□□ -0.45
HLA-DMBP28068 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC12.21□□□□□ -0.45
HLA-DMBP28068 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DMBP28068 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC12.21□□□□□ -0.45
HLA-DMBP28068 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DMBP28068 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DMBP28068 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC12.21□□□□□ -0.45
HLA-DMBP28068 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DMBP28068 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
HLA-DMBP28068 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DMBP28068 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC12.21□□□□□ -0.45
HLA-DMBP28068 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
HLA-DMBP28068 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
HLA-DMBP28068 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DMBP28068 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC12.21□□□□□ -0.45
HLA-DMBP28068 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DMBP28068 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC12.21□□□□□ -0.45
HLA-DMBP28068 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC12.21□□□□□ -0.45
HLA-DMBP28068 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DMBP28068 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DMBP28068 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DMBP28068 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DMBP28068 RPSAP43-201ENST00000402237 625 ntBASIC12.21□□□□□ -0.45
HLA-DMBP28068 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC12.21□□□□□ -0.45
HLA-DMBP28068 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DMBP28068 MDH2-205ENST00000461263 648 ntTSL 2 BASIC12.21□□□□□ -0.45
HLA-DMBP28068 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DMBP28068 DHDH-204ENST00000523250 634 ntTSL 5 BASIC12.21□□□□□ -0.45
HLA-DMBP28068 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DMBP28068 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC12.21□□□□□ -0.45
HLA-DMBP28068 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.45
HLA-DMBP28068 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DMBP28068 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.45
HLA-DMBP28068 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC12.21□□□□□ -0.45
HLA-DMBP28068 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
HLA-DMBP28068 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC12.21□□□□□ -0.45
HLA-DMBP28068 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DMBP28068 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DMBP28068 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DMBP28068 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DMBP28068 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
HLA-DMBP28068 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DMBP28068 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DMBP28068 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.46
HLA-DMBP28068 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
HLA-DMBP28068 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.46
HLA-DMBP28068 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC12.21□□□□□ -0.46
HLA-DMBP28068 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.46
HLA-DMBP28068 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
HLA-DMBP28068 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
HLA-DMBP28068 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC12.21□□□□□ -0.46
HLA-DMBP28068 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
HLA-DMBP28068 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
HLA-DMBP28068 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
HLA-DMBP28068 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
HLA-DMBP28068 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC12.21□□□□□ -0.46
HLA-DMBP28068 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
HLA-DMBP28068 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.46
HLA-DMBP28068 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC12.21□□□□□ -0.46
HLA-DMBP28068 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
HLA-DMBP28068 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DMBP28068 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DMBP28068 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DMBP28068 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DMBP28068 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DMBP28068 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC12.2□□□□□ -0.46
HLA-DMBP28068 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC12.2□□□□□ -0.46
HLA-DMBP28068 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
HLA-DMBP28068 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DMBP28068 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DMBP28068 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DMBP28068 TNRC18P2-201ENST00000417666 2714 ntBASIC12.2□□□□□ -0.46
HLA-DMBP28068 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC12.2□□□□□ -0.46
HLA-DMBP28068 AL161772.1-201ENST00000610494 4412 ntBASIC12.2□□□□□ -0.46
HLA-DMBP28068 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms