Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 VMA21-202ENST00000370361 693 ntTSL 5 BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 SPDYE17-201ENST00000412399 783 ntBASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 CYMP-203ENST00000474680 1263 ntBASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 DUX4L27-201ENST00000554796 1261 ntBASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 AC073592.8-201ENST00000624126 511 ntBASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 AC055876.3-201ENST00000431496 288 ntBASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 AC097493.3-201ENST00000509725 367 ntBASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 AC027369.6-201ENST00000525520 931 ntBASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 AL079307.3-201ENST00000556114 283 ntBASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 AC069224.1-201ENST00000566372 1715 ntBASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 PRR29-209ENST00000582540 967 ntTSL 2 BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 AC024909.3-201ENST00000611513 2257 ntBASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 AC138649.4-201ENST00000612222 287 ntBASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC14.79□□□□□ -0.04
NUP54Q7Z3B4 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 CDC14C-201ENST00000428251 1719 ntBASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms