Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Lima1Q9ERG0 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC20.81■□□□□ 0.92
Lima1Q9ERG0 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Lima1Q9ERG0 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Lima1Q9ERG0 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Lima1Q9ERG0 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Lima1Q9ERG0 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC20.8■□□□□ 0.92
Lima1Q9ERG0 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Lima1Q9ERG0 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Lima1Q9ERG0 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Lima1Q9ERG0 AC151971.4-201ENSMUST00000214717 704 ntBASIC20.8■□□□□ 0.92
Lima1Q9ERG0 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC20.8■□□□□ 0.92
Lima1Q9ERG0 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Lima1Q9ERG0 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Lima1Q9ERG0 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC20.79■□□□□ 0.92
Lima1Q9ERG0 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Lima1Q9ERG0 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Lima1Q9ERG0 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Lima1Q9ERG0 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Lima1Q9ERG0 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Lima1Q9ERG0 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Lima1Q9ERG0 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Lima1Q9ERG0 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC20.78■□□□□ 0.92
Lima1Q9ERG0 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
Lima1Q9ERG0 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC20.78■□□□□ 0.92
Lima1Q9ERG0 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Lima1Q9ERG0 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Lima1Q9ERG0 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Lima1Q9ERG0 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Lima1Q9ERG0 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Lima1Q9ERG0 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Lima1Q9ERG0 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Lima1Q9ERG0 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Lima1Q9ERG0 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC20.77■□□□□ 0.92
Lima1Q9ERG0 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Lima1Q9ERG0 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Lima1Q9ERG0 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.92
Lima1Q9ERG0 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC20.76■□□□□ 0.91
Lima1Q9ERG0 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Lima1Q9ERG0 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Lima1Q9ERG0 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Lima1Q9ERG0 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Lima1Q9ERG0 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Lima1Q9ERG0 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Lima1Q9ERG0 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Lima1Q9ERG0 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Lima1Q9ERG0 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC20.76■□□□□ 0.91
Lima1Q9ERG0 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
Lima1Q9ERG0 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Lima1Q9ERG0 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Lima1Q9ERG0 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Lima1Q9ERG0 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Lima1Q9ERG0 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Lima1Q9ERG0 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Lima1Q9ERG0 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC20.74■□□□□ 0.91
Lima1Q9ERG0 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Lima1Q9ERG0 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Lima1Q9ERG0 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Lima1Q9ERG0 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Lima1Q9ERG0 AC117769.4-201ENSMUST00000225679 685 ntBASIC20.74■□□□□ 0.91
Lima1Q9ERG0 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Lima1Q9ERG0 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC20.74■□□□□ 0.91
Lima1Q9ERG0 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Lima1Q9ERG0 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Lima1Q9ERG0 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Lima1Q9ERG0 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Lima1Q9ERG0 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Lima1Q9ERG0 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Lima1Q9ERG0 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Lima1Q9ERG0 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Lima1Q9ERG0 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Lima1Q9ERG0 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
Lima1Q9ERG0 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Lima1Q9ERG0 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Lima1Q9ERG0 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Lima1Q9ERG0 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lima1Q9ERG0 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Lima1Q9ERG0 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lima1Q9ERG0 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lima1Q9ERG0 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Lima1Q9ERG0 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Lima1Q9ERG0 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lima1Q9ERG0 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Lima1Q9ERG0 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
Lima1Q9ERG0 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lima1Q9ERG0 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lima1Q9ERG0 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lima1Q9ERG0 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
Lima1Q9ERG0 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lima1Q9ERG0 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Lima1Q9ERG0 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lima1Q9ERG0 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lima1Q9ERG0 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lima1Q9ERG0 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lima1Q9ERG0 Kdm3b-204ENSMUST00000224715 2032 ntBASIC20.7■□□□□ 0.9
Lima1Q9ERG0 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lima1Q9ERG0 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Lima1Q9ERG0 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Lima1Q9ERG0 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Lima1Q9ERG0 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms