Protein–RNA interactions for Protein: Q99LC2

Cstf1, Cleavage stimulation factor subunit 1, mousemouse

Known RBP Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf1Q99LC2 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cstf1Q99LC2 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Cstf1Q99LC2 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Cstf1Q99LC2 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cstf1Q99LC2 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cstf1Q99LC2 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cstf1Q99LC2 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC21.18■□□□□ 0.98
Cstf1Q99LC2 Gm2011-201ENSMUST00000203124 1263 ntBASIC21.18■□□□□ 0.98
Cstf1Q99LC2 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cstf1Q99LC2 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cstf1Q99LC2 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cstf1Q99LC2 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cstf1Q99LC2 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cstf1Q99LC2 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
Cstf1Q99LC2 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC21.17■□□□□ 0.98
Cstf1Q99LC2 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC21.17■□□□□ 0.98
Cstf1Q99LC2 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC21.17■□□□□ 0.98
Cstf1Q99LC2 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cstf1Q99LC2 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cstf1Q99LC2 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Cstf1Q99LC2 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cstf1Q99LC2 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cstf1Q99LC2 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cstf1Q99LC2 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cstf1Q99LC2 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cstf1Q99LC2 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cstf1Q99LC2 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC21.16■□□□□ 0.98
Cstf1Q99LC2 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Cstf1Q99LC2 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Cstf1Q99LC2 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cstf1Q99LC2 AC117245.4-201ENSMUST00000217388 1646 ntBASIC21.15■□□□□ 0.98
Cstf1Q99LC2 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cstf1Q99LC2 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC21.15■□□□□ 0.98
Cstf1Q99LC2 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cstf1Q99LC2 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
Cstf1Q99LC2 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
Cstf1Q99LC2 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cstf1Q99LC2 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Cstf1Q99LC2 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cstf1Q99LC2 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cstf1Q99LC2 Gm6139-201ENSMUST00000079261 882 ntBASIC21.14■□□□□ 0.97
Cstf1Q99LC2 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Cstf1Q99LC2 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cstf1Q99LC2 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Cstf1Q99LC2 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cstf1Q99LC2 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cstf1Q99LC2 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cstf1Q99LC2 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cstf1Q99LC2 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC21.13■□□□□ 0.97
Cstf1Q99LC2 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
Cstf1Q99LC2 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
Cstf1Q99LC2 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cstf1Q99LC2 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cstf1Q99LC2 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cstf1Q99LC2 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cstf1Q99LC2 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC21.12■□□□□ 0.97
Cstf1Q99LC2 AC164629.5-201ENSMUST00000220387 632 ntBASIC21.12■□□□□ 0.97
Cstf1Q99LC2 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cstf1Q99LC2 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cstf1Q99LC2 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC21.12■□□□□ 0.97
Cstf1Q99LC2 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cstf1Q99LC2 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cstf1Q99LC2 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cstf1Q99LC2 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cstf1Q99LC2 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC21.1■□□□□ 0.97
Cstf1Q99LC2 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Cstf1Q99LC2 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cstf1Q99LC2 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cstf1Q99LC2 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Cstf1Q99LC2 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cstf1Q99LC2 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Cstf1Q99LC2 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cstf1Q99LC2 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC21.1■□□□□ 0.97
Cstf1Q99LC2 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cstf1Q99LC2 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cstf1Q99LC2 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Cstf1Q99LC2 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cstf1Q99LC2 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cstf1Q99LC2 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Cstf1Q99LC2 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC21.09■□□□□ 0.97
Cstf1Q99LC2 Spcs1-207ENSMUST00000228767 1008 ntBASIC21.09■□□□□ 0.97
Cstf1Q99LC2 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cstf1Q99LC2 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cstf1Q99LC2 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Cstf1Q99LC2 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
Cstf1Q99LC2 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Cstf1Q99LC2 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
Cstf1Q99LC2 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC21.08■□□□□ 0.97
Cstf1Q99LC2 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Cstf1Q99LC2 Gm21168-201ENSMUST00000199646 1096 ntBASIC21.08■□□□□ 0.97
Cstf1Q99LC2 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC21.08■□□□□ 0.97
Cstf1Q99LC2 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Cstf1Q99LC2 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC21.08■□□□□ 0.96
Cstf1Q99LC2 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Cstf1Q99LC2 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cstf1Q99LC2 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cstf1Q99LC2 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cstf1Q99LC2 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cstf1Q99LC2 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cstf1Q99LC2 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 45.1 ms