Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ushbp1Q8R370 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ushbp1Q8R370 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ushbp1Q8R370 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Ushbp1Q8R370 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC23.76■■□□□ 1.39
Ushbp1Q8R370 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
Ushbp1Q8R370 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Ushbp1Q8R370 Gm13042-201ENSMUST00000119244 1955 ntBASIC23.75■■□□□ 1.39
Ushbp1Q8R370 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC23.75■■□□□ 1.39
Ushbp1Q8R370 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
Ushbp1Q8R370 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Ushbp1Q8R370 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
Ushbp1Q8R370 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC23.74■■□□□ 1.39
Ushbp1Q8R370 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Ushbp1Q8R370 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Ushbp1Q8R370 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Ushbp1Q8R370 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC23.74■■□□□ 1.39
Ushbp1Q8R370 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Ushbp1Q8R370 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Ushbp1Q8R370 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Ushbp1Q8R370 Gm37415-201ENSMUST00000192265 2054 ntBASIC23.73■■□□□ 1.39
Ushbp1Q8R370 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC23.73■■□□□ 1.39
Ushbp1Q8R370 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Ushbp1Q8R370 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Ushbp1Q8R370 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Ushbp1Q8R370 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Ushbp1Q8R370 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC23.73■■□□□ 1.39
Ushbp1Q8R370 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
Ushbp1Q8R370 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC23.72■■□□□ 1.39
Ushbp1Q8R370 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC23.72■■□□□ 1.39
Ushbp1Q8R370 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
Ushbp1Q8R370 Nsd1-206ENSMUST00000224918 1001 ntBASIC23.72■■□□□ 1.39
Ushbp1Q8R370 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Ushbp1Q8R370 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Ushbp1Q8R370 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC23.72■■□□□ 1.39
Ushbp1Q8R370 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Ushbp1Q8R370 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
Ushbp1Q8R370 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
Ushbp1Q8R370 Gm42418-201ENSMUST00000182010 1831 ntBASIC23.7■■□□□ 1.39
Ushbp1Q8R370 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC23.7■■□□□ 1.38
Ushbp1Q8R370 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Ushbp1Q8R370 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Ushbp1Q8R370 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC23.7■■□□□ 1.38
Ushbp1Q8R370 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
Ushbp1Q8R370 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Ushbp1Q8R370 Gm32051-202ENSMUST00000197905 2385 ntBASIC23.69■■□□□ 1.38
Ushbp1Q8R370 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC23.69■■□□□ 1.38
Ushbp1Q8R370 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Ushbp1Q8R370 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Ushbp1Q8R370 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Ushbp1Q8R370 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC23.68■■□□□ 1.38
Ushbp1Q8R370 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC23.68■■□□□ 1.38
Ushbp1Q8R370 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Ushbp1Q8R370 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Ushbp1Q8R370 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
Ushbp1Q8R370 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
Ushbp1Q8R370 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Ushbp1Q8R370 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Ushbp1Q8R370 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC23.67■■□□□ 1.38
Ushbp1Q8R370 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Ushbp1Q8R370 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Ushbp1Q8R370 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Ushbp1Q8R370 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Ushbp1Q8R370 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC23.67■■□□□ 1.38
Ushbp1Q8R370 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Ushbp1Q8R370 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Ushbp1Q8R370 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC23.66■■□□□ 1.38
Ushbp1Q8R370 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC23.66■■□□□ 1.38
Ushbp1Q8R370 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Ushbp1Q8R370 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
Ushbp1Q8R370 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC23.65■■□□□ 1.38
Ushbp1Q8R370 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
Ushbp1Q8R370 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
Ushbp1Q8R370 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC23.64■■□□□ 1.38
Ushbp1Q8R370 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.38
Ushbp1Q8R370 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
Ushbp1Q8R370 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
Ushbp1Q8R370 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Ushbp1Q8R370 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Ushbp1Q8R370 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
Ushbp1Q8R370 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
Ushbp1Q8R370 Etf1-202ENSMUST00000180351 108 ntBASIC23.64■■□□□ 1.37
Ushbp1Q8R370 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC23.64■■□□□ 1.37
Ushbp1Q8R370 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Ushbp1Q8R370 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.37
Ushbp1Q8R370 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.37
Ushbp1Q8R370 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC23.64■■□□□ 1.37
Ushbp1Q8R370 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.37
Ushbp1Q8R370 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Ushbp1Q8R370 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC23.63■■□□□ 1.37
Ushbp1Q8R370 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Ushbp1Q8R370 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Ushbp1Q8R370 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Ushbp1Q8R370 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC23.63■■□□□ 1.37
Ushbp1Q8R370 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
Ushbp1Q8R370 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC23.63■■□□□ 1.37
Ushbp1Q8R370 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Ushbp1Q8R370 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Ushbp1Q8R370 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Ushbp1Q8R370 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Retrieved 100 of 76,532 protein–RNA pairs in 61.1 ms