Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC20.1■□□□□ 0.81
Nr1h4Q60641 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC20.1■□□□□ 0.81
Nr1h4Q60641 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Nr1h4Q60641 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Nr1h4Q60641 Gm6311-201ENSMUST00000073790 878 ntBASIC20.1■□□□□ 0.81
Nr1h4Q60641 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Nr1h4Q60641 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Nr1h4Q60641 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC20.1■□□□□ 0.81
Nr1h4Q60641 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Nr1h4Q60641 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
Nr1h4Q60641 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Nr1h4Q60641 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Nr1h4Q60641 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Nr1h4Q60641 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
Nr1h4Q60641 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Nr1h4Q60641 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Nr1h4Q60641 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Nr1h4Q60641 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Nr1h4Q60641 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Nr1h4Q60641 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
Nr1h4Q60641 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC20.08■□□□□ 0.81
Nr1h4Q60641 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Nr1h4Q60641 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Nr1h4Q60641 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Nr1h4Q60641 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Nr1h4Q60641 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Nr1h4Q60641 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Nr1h4Q60641 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Nr1h4Q60641 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Nr1h4Q60641 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Nr1h4Q60641 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Nr1h4Q60641 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Nr1h4Q60641 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Nr1h4Q60641 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Nr1h4Q60641 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Nr1h4Q60641 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Nr1h4Q60641 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Nr1h4Q60641 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Nr1h4Q60641 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Nr1h4Q60641 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC20.07■□□□□ 0.8
Nr1h4Q60641 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Nr1h4Q60641 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Nr1h4Q60641 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Nr1h4Q60641 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC20.06■□□□□ 0.8
Nr1h4Q60641 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
Nr1h4Q60641 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC20.06■□□□□ 0.8
Nr1h4Q60641 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Nr1h4Q60641 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Nr1h4Q60641 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Nr1h4Q60641 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Nr1h4Q60641 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Nr1h4Q60641 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC20.05■□□□□ 0.8
Nr1h4Q60641 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nr1h4Q60641 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Nr1h4Q60641 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC20.05■□□□□ 0.8
Nr1h4Q60641 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nr1h4Q60641 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nr1h4Q60641 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nr1h4Q60641 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nr1h4Q60641 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Nr1h4Q60641 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC20.04■□□□□ 0.8
Nr1h4Q60641 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Nr1h4Q60641 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Nr1h4Q60641 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nr1h4Q60641 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nr1h4Q60641 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nr1h4Q60641 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nr1h4Q60641 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC20.03■□□□□ 0.8
Nr1h4Q60641 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
Nr1h4Q60641 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nr1h4Q60641 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Nr1h4Q60641 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Nr1h4Q60641 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
Nr1h4Q60641 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Nr1h4Q60641 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Nr1h4Q60641 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Nr1h4Q60641 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Nr1h4Q60641 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Nr1h4Q60641 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC20.01■□□□□ 0.79
Nr1h4Q60641 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Nr1h4Q60641 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Nr1h4Q60641 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Nr1h4Q60641 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Nr1h4Q60641 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC20■□□□□ 0.79
Nr1h4Q60641 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Nr1h4Q60641 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC20■□□□□ 0.79
Nr1h4Q60641 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Nr1h4Q60641 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
Nr1h4Q60641 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC20■□□□□ 0.79
Nr1h4Q60641 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Nr1h4Q60641 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Nr1h4Q60641 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Nr1h4Q60641 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Nr1h4Q60641 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Nr1h4Q60641 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Nr1h4Q60641 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC19.99■□□□□ 0.79
Nr1h4Q60641 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Nr1h4Q60641 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Nr1h4Q60641 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Nr1h4Q60641 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 10.7 ms