Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC18.97■□□□□ 0.63
Pcdhgb8A0A140LI48 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Pcdhgb8A0A140LI48 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Pcdhgb8A0A140LI48 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
Pcdhgb8A0A140LI48 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
Pcdhgb8A0A140LI48 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Pcdhgb8A0A140LI48 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Pcdhgb8A0A140LI48 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Pcdhgb8A0A140LI48 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Pcdhgb8A0A140LI48 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Pcdhgb8A0A140LI48 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Pcdhgb8A0A140LI48 AC117769.4-201ENSMUST00000225679 685 ntBASIC18.95■□□□□ 0.62
Pcdhgb8A0A140LI48 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
Pcdhgb8A0A140LI48 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Pcdhgb8A0A140LI48 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Pcdhgb8A0A140LI48 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
Pcdhgb8A0A140LI48 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC18.94■□□□□ 0.62
Pcdhgb8A0A140LI48 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC18.94■□□□□ 0.62
Pcdhgb8A0A140LI48 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Pcdhgb8A0A140LI48 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
Pcdhgb8A0A140LI48 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Pcdhgb8A0A140LI48 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Pcdhgb8A0A140LI48 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Pcdhgb8A0A140LI48 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Pcdhgb8A0A140LI48 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Pcdhgb8A0A140LI48 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Pcdhgb8A0A140LI48 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Pcdhgb8A0A140LI48 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC18.92■□□□□ 0.62
Pcdhgb8A0A140LI48 AC153962.1-201ENSMUST00000218530 1948 ntBASIC18.92■□□□□ 0.62
Pcdhgb8A0A140LI48 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Pcdhgb8A0A140LI48 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Pcdhgb8A0A140LI48 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Pcdhgb8A0A140LI48 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Pcdhgb8A0A140LI48 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Pcdhgb8A0A140LI48 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Pcdhgb8A0A140LI48 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Pcdhgb8A0A140LI48 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Pcdhgb8A0A140LI48 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Pcdhgb8A0A140LI48 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Pcdhgb8A0A140LI48 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Pcdhgb8A0A140LI48 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Pcdhgb8A0A140LI48 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Pcdhgb8A0A140LI48 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Pcdhgb8A0A140LI48 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Pcdhgb8A0A140LI48 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Pcdhgb8A0A140LI48 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Pcdhgb8A0A140LI48 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Pcdhgb8A0A140LI48 Gm5921-201ENSMUST00000075898 882 ntBASIC18.9■□□□□ 0.62
Pcdhgb8A0A140LI48 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
Pcdhgb8A0A140LI48 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Pcdhgb8A0A140LI48 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC18.89■□□□□ 0.61
Pcdhgb8A0A140LI48 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Pcdhgb8A0A140LI48 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Pcdhgb8A0A140LI48 Gm10616-201ENSMUST00000205285 2127 ntBASIC18.89■□□□□ 0.61
Pcdhgb8A0A140LI48 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Pcdhgb8A0A140LI48 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Pcdhgb8A0A140LI48 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Pcdhgb8A0A140LI48 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Pcdhgb8A0A140LI48 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Pcdhgb8A0A140LI48 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Pcdhgb8A0A140LI48 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC18.88■□□□□ 0.61
Pcdhgb8A0A140LI48 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Pcdhgb8A0A140LI48 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC18.87■□□□□ 0.61
Pcdhgb8A0A140LI48 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Pcdhgb8A0A140LI48 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Pcdhgb8A0A140LI48 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Pcdhgb8A0A140LI48 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Pcdhgb8A0A140LI48 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Pcdhgb8A0A140LI48 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Pcdhgb8A0A140LI48 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Pcdhgb8A0A140LI48 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Pcdhgb8A0A140LI48 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Pcdhgb8A0A140LI48 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Pcdhgb8A0A140LI48 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
Pcdhgb8A0A140LI48 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Pcdhgb8A0A140LI48 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Pcdhgb8A0A140LI48 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Pcdhgb8A0A140LI48 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Pcdhgb8A0A140LI48 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Pcdhgb8A0A140LI48 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Pcdhgb8A0A140LI48 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Pcdhgb8A0A140LI48 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Pcdhgb8A0A140LI48 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Pcdhgb8A0A140LI48 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
Pcdhgb8A0A140LI48 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC18.85■□□□□ 0.61
Pcdhgb8A0A140LI48 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Pcdhgb8A0A140LI48 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Pcdhgb8A0A140LI48 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Pcdhgb8A0A140LI48 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC18.84■□□□□ 0.61
Pcdhgb8A0A140LI48 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Pcdhgb8A0A140LI48 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC18.84■□□□□ 0.61
Pcdhgb8A0A140LI48 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC18.84■□□□□ 0.61
Pcdhgb8A0A140LI48 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Pcdhgb8A0A140LI48 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
Pcdhgb8A0A140LI48 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
Pcdhgb8A0A140LI48 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Pcdhgb8A0A140LI48 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC18.83■□□□□ 0.61
Pcdhgb8A0A140LI48 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Pcdhgb8A0A140LI48 Gm43592-201ENSMUST00000196922 1165 ntBASIC18.83■□□□□ 0.6
Pcdhgb8A0A140LI48 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 14.2 ms