Protein–RNA interactions for Protein: Q9R1N9

Col13a1, Collagen alpha-1(XIII) chain, mousemouse

Predictions only

Length 751 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col13a1Q9R1N9 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
Col13a1Q9R1N9 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC23.63■■□□□ 1.37
Col13a1Q9R1N9 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC23.63■■□□□ 1.37
Col13a1Q9R1N9 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC23.62■■□□□ 1.37
Col13a1Q9R1N9 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC23.61■■□□□ 1.37
Col13a1Q9R1N9 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Col13a1Q9R1N9 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC23.6■■□□□ 1.37
Col13a1Q9R1N9 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC23.6■■□□□ 1.37
Col13a1Q9R1N9 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Col13a1Q9R1N9 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC23.57■■□□□ 1.36
Col13a1Q9R1N9 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Col13a1Q9R1N9 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
Col13a1Q9R1N9 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Col13a1Q9R1N9 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Col13a1Q9R1N9 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Col13a1Q9R1N9 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Col13a1Q9R1N9 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Col13a1Q9R1N9 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Col13a1Q9R1N9 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
Col13a1Q9R1N9 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC23.43■■□□□ 1.34
Col13a1Q9R1N9 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
Col13a1Q9R1N9 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC23.39■■□□□ 1.33
Col13a1Q9R1N9 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Col13a1Q9R1N9 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
Col13a1Q9R1N9 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Col13a1Q9R1N9 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
Col13a1Q9R1N9 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC23.25■■□□□ 1.31
Col13a1Q9R1N9 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Col13a1Q9R1N9 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Col13a1Q9R1N9 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
Col13a1Q9R1N9 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Col13a1Q9R1N9 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Col13a1Q9R1N9 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Col13a1Q9R1N9 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Col13a1Q9R1N9 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Col13a1Q9R1N9 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Col13a1Q9R1N9 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
Col13a1Q9R1N9 Gm10524-201ENSMUST00000181931 1893 ntBASIC23.09■■□□□ 1.29
Col13a1Q9R1N9 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Col13a1Q9R1N9 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Col13a1Q9R1N9 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Col13a1Q9R1N9 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC23.07■■□□□ 1.28
Col13a1Q9R1N9 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
Col13a1Q9R1N9 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC23.02■■□□□ 1.28
Col13a1Q9R1N9 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
Col13a1Q9R1N9 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Col13a1Q9R1N9 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Col13a1Q9R1N9 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC22.95■■□□□ 1.26
Col13a1Q9R1N9 AC166822.3-201ENSMUST00000227394 661 ntBASIC22.95■■□□□ 1.26
Col13a1Q9R1N9 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
Col13a1Q9R1N9 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC22.92■■□□□ 1.26
Col13a1Q9R1N9 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Col13a1Q9R1N9 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC22.91■■□□□ 1.26
Col13a1Q9R1N9 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Col13a1Q9R1N9 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Col13a1Q9R1N9 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
Col13a1Q9R1N9 Tdp2-203ENSMUST00000223804 1136 ntBASIC22.84■■□□□ 1.25
Col13a1Q9R1N9 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC22.84■■□□□ 1.25
Col13a1Q9R1N9 Gm16148-201ENSMUST00000119653 893 ntBASIC22.83■■□□□ 1.25
Col13a1Q9R1N9 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
Col13a1Q9R1N9 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Col13a1Q9R1N9 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
Col13a1Q9R1N9 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC22.81■■□□□ 1.24
Col13a1Q9R1N9 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
Col13a1Q9R1N9 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC22.76■■□□□ 1.23
Col13a1Q9R1N9 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
Col13a1Q9R1N9 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC22.73■■□□□ 1.23
Col13a1Q9R1N9 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC22.72■■□□□ 1.23
Col13a1Q9R1N9 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Col13a1Q9R1N9 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC22.71■■□□□ 1.23
Col13a1Q9R1N9 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC22.71■■□□□ 1.23
Col13a1Q9R1N9 AL845457.1-201ENSMUST00000197244 68 ntBASIC22.71■■□□□ 1.23
Col13a1Q9R1N9 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC22.69■■□□□ 1.22
Col13a1Q9R1N9 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC22.69■■□□□ 1.22
Col13a1Q9R1N9 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Col13a1Q9R1N9 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Col13a1Q9R1N9 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
Col13a1Q9R1N9 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Col13a1Q9R1N9 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.22
Col13a1Q9R1N9 Gm42596-201ENSMUST00000196305 1958 ntBASIC22.64■■□□□ 1.21
Col13a1Q9R1N9 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.21
Col13a1Q9R1N9 CT025624.2-201ENSMUST00000223609 1909 ntBASIC22.63■■□□□ 1.21
Col13a1Q9R1N9 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Col13a1Q9R1N9 Gm45855-201ENSMUST00000212546 880 ntBASIC22.6■■□□□ 1.21
Col13a1Q9R1N9 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Col13a1Q9R1N9 Gm5987-201ENSMUST00000196433 1151 ntBASIC22.59■■□□□ 1.21
Col13a1Q9R1N9 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC22.58■■□□□ 1.21
Col13a1Q9R1N9 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC22.58■■□□□ 1.21
Col13a1Q9R1N9 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
Col13a1Q9R1N9 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Col13a1Q9R1N9 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
Col13a1Q9R1N9 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC22.56■■□□□ 1.2
Col13a1Q9R1N9 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
Col13a1Q9R1N9 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC22.52■■□□□ 1.2
Col13a1Q9R1N9 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Col13a1Q9R1N9 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Col13a1Q9R1N9 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Col13a1Q9R1N9 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Col13a1Q9R1N9 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
Col13a1Q9R1N9 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC22.44■■□□□ 1.18
Retrieved 100 of 76,532 protein–RNA pairs in 14.3 ms