Protein–RNA interactions for Protein: Q9R1N9

Col13a1, Collagen alpha-1(XIII) chain, mousemouse

Predictions only

Length 751 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col13a1Q9R1N9 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC23,63■■□□□ 1,37
Col13a1Q9R1N9 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC23,63■■□□□ 1,37
Col13a1Q9R1N9 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC23,63■■□□□ 1,37
Col13a1Q9R1N9 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC23,62■■□□□ 1,37
Col13a1Q9R1N9 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC23,61■■□□□ 1,37
Col13a1Q9R1N9 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC23,6■■□□□ 1,37
Col13a1Q9R1N9 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC23,6■■□□□ 1,37
Col13a1Q9R1N9 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC23,6■■□□□ 1,37
Col13a1Q9R1N9 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC23,58■■□□□ 1,37
Col13a1Q9R1N9 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC23,57■■□□□ 1,36
Col13a1Q9R1N9 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC23,56■■□□□ 1,36
Col13a1Q9R1N9 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC23,56■■□□□ 1,36
Col13a1Q9R1N9 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC23,55■■□□□ 1,36
Col13a1Q9R1N9 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC23,53■■□□□ 1,36
Col13a1Q9R1N9 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC23,51■■□□□ 1,35
Col13a1Q9R1N9 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC23,5■■□□□ 1,35
Col13a1Q9R1N9 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC23,48■■□□□ 1,35
Col13a1Q9R1N9 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC23,47■■□□□ 1,35
Col13a1Q9R1N9 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC23,45■■□□□ 1,34
Col13a1Q9R1N9 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC23,43■■□□□ 1,34
Col13a1Q9R1N9 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC23,39■■□□□ 1,34
Col13a1Q9R1N9 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC23,39■■□□□ 1,33
Col13a1Q9R1N9 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC23,31■■□□□ 1,32
Col13a1Q9R1N9 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC23,3■■□□□ 1,32
Col13a1Q9R1N9 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC23,29■■□□□ 1,32
Col13a1Q9R1N9 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC23,27■■□□□ 1,32
Col13a1Q9R1N9 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC23,25■■□□□ 1,31
Col13a1Q9R1N9 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC23,24■■□□□ 1,31
Col13a1Q9R1N9 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC23,22■■□□□ 1,31
Col13a1Q9R1N9 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC23,19■■□□□ 1,3
Col13a1Q9R1N9 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC23,18■■□□□ 1,3
Col13a1Q9R1N9 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC23,13■■□□□ 1,29
Col13a1Q9R1N9 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC23,11■■□□□ 1,29
Col13a1Q9R1N9 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC23,1■■□□□ 1,29
Col13a1Q9R1N9 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC23,1■■□□□ 1,29
Col13a1Q9R1N9 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC23,1■■□□□ 1,29
Col13a1Q9R1N9 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC23,09■■□□□ 1,29
Col13a1Q9R1N9 Gm10524-201ENSMUST00000181931 1893 ntBASIC23,09■■□□□ 1,29
Col13a1Q9R1N9 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC23,08■■□□□ 1,29
Col13a1Q9R1N9 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC23,07■■□□□ 1,28
Col13a1Q9R1N9 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC23,07■■□□□ 1,28
Col13a1Q9R1N9 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC23,07■■□□□ 1,28
Col13a1Q9R1N9 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC23,04■■□□□ 1,28
Col13a1Q9R1N9 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC23,02■■□□□ 1,28
Col13a1Q9R1N9 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1,27
Col13a1Q9R1N9 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC22,99■■□□□ 1,27
Col13a1Q9R1N9 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC22,98■■□□□ 1,27
Col13a1Q9R1N9 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC22,95■■□□□ 1,26
Col13a1Q9R1N9 AC166822.3-201ENSMUST00000227394 661 ntBASIC22,95■■□□□ 1,26
Col13a1Q9R1N9 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC22,92■■□□□ 1,26
Col13a1Q9R1N9 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC22,92■■□□□ 1,26
Col13a1Q9R1N9 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC22,91■■□□□ 1,26
Col13a1Q9R1N9 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC22,91■■□□□ 1,26
Col13a1Q9R1N9 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC22,91■■□□□ 1,26
Col13a1Q9R1N9 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC22,86■■□□□ 1,25
Col13a1Q9R1N9 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC22,85■■□□□ 1,25
Col13a1Q9R1N9 Tdp2-203ENSMUST00000223804 1136 ntBASIC22,84■■□□□ 1,25
Col13a1Q9R1N9 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC22,84■■□□□ 1,25
Col13a1Q9R1N9 Gm16148-201ENSMUST00000119653 893 ntBASIC22,83■■□□□ 1,25
Col13a1Q9R1N9 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC22,83■■□□□ 1,25
Col13a1Q9R1N9 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC22,83■■□□□ 1,25
Col13a1Q9R1N9 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC22,83■■□□□ 1,24
Col13a1Q9R1N9 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC22,81■■□□□ 1,24
Col13a1Q9R1N9 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC22,78■■□□□ 1,24
Col13a1Q9R1N9 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC22,76■■□□□ 1,23
Col13a1Q9R1N9 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC22,73■■□□□ 1,23
Col13a1Q9R1N9 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC22,73■■□□□ 1,23
Col13a1Q9R1N9 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC22,72■■□□□ 1,23
Col13a1Q9R1N9 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC22,72■■□□□ 1,23
Col13a1Q9R1N9 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC22,71■■□□□ 1,23
Col13a1Q9R1N9 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC22,71■■□□□ 1,23
Col13a1Q9R1N9 AL845457.1-201ENSMUST00000197244 68 ntBASIC22,71■■□□□ 1,23
Col13a1Q9R1N9 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC22,69■■□□□ 1,22
Col13a1Q9R1N9 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC22,69■■□□□ 1,22
Col13a1Q9R1N9 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC22,68■■□□□ 1,22
Col13a1Q9R1N9 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC22,66■■□□□ 1,22
Col13a1Q9R1N9 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC22,66■■□□□ 1,22
Col13a1Q9R1N9 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC22,66■■□□□ 1,22
Col13a1Q9R1N9 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC22,64■■□□□ 1,22
Col13a1Q9R1N9 Gm42596-201ENSMUST00000196305 1958 ntBASIC22,64■■□□□ 1,21
Col13a1Q9R1N9 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC22,64■■□□□ 1,21
Col13a1Q9R1N9 CT025624.2-201ENSMUST00000223609 1909 ntBASIC22,63■■□□□ 1,21
Col13a1Q9R1N9 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC22,6■■□□□ 1,21
Col13a1Q9R1N9 Gm45855-201ENSMUST00000212546 880 ntBASIC22,6■■□□□ 1,21
Col13a1Q9R1N9 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC22,6■■□□□ 1,21
Col13a1Q9R1N9 Gm5987-201ENSMUST00000196433 1151 ntBASIC22,59■■□□□ 1,21
Col13a1Q9R1N9 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC22,58■■□□□ 1,21
Col13a1Q9R1N9 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC22,58■■□□□ 1,21
Col13a1Q9R1N9 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC22,57■■□□□ 1,2
Col13a1Q9R1N9 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC22,57■■□□□ 1,2
Col13a1Q9R1N9 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC22,57■■□□□ 1,2
Col13a1Q9R1N9 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC22,56■■□□□ 1,2
Col13a1Q9R1N9 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC22,53■■□□□ 1,2
Col13a1Q9R1N9 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC22,52■■□□□ 1,2
Col13a1Q9R1N9 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC22,51■■□□□ 1,19
Col13a1Q9R1N9 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC22,5■■□□□ 1,19
Col13a1Q9R1N9 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC22,5■■□□□ 1,19
Col13a1Q9R1N9 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC22,48■■□□□ 1,19
Col13a1Q9R1N9 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC22,47■■□□□ 1,19
Col13a1Q9R1N9 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC22,44■■□□□ 1,18
Retrieved 100 of 76,532 protein–RNA pairs in 35,1 ms