Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC33.96■■■■□ 3.03
Upf1Q9EPU0 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC33.95■■■■□ 3.03
Upf1Q9EPU0 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC33.92■■■■□ 3.02
Upf1Q9EPU0 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC33.91■■■■□ 3.02
Upf1Q9EPU0 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC33.85■■■■□ 3.01
Upf1Q9EPU0 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC33.84■■■■□ 3.01
Upf1Q9EPU0 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC33.84■■■■□ 3.01
Upf1Q9EPU0 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC33.79■■■■□ 3
Upf1Q9EPU0 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC33.78■■■■□ 3
Upf1Q9EPU0 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC33.71■■■□□ 2.99
Upf1Q9EPU0 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC33.65■■■□□ 2.98
Upf1Q9EPU0 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC33.64■■■□□ 2.98
Upf1Q9EPU0 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC33.63■■■□□ 2.97
Upf1Q9EPU0 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC33.61■■■□□ 2.97
Upf1Q9EPU0 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC33.6■■■□□ 2.97
Upf1Q9EPU0 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC33.54■■■□□ 2.96
Upf1Q9EPU0 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC33.53■■■□□ 2.96
Upf1Q9EPU0 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC33.5■■■□□ 2.95
Upf1Q9EPU0 Gm5987-201ENSMUST00000196433 1151 ntBASIC33.49■■■□□ 2.95
Upf1Q9EPU0 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC33.48■■■□□ 2.95
Upf1Q9EPU0 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC33.48■■■□□ 2.95
Upf1Q9EPU0 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC33.47■■■□□ 2.95
Upf1Q9EPU0 Tdp2-203ENSMUST00000223804 1136 ntBASIC33.43■■■□□ 2.94
Upf1Q9EPU0 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC33.4■■■□□ 2.94
Upf1Q9EPU0 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC33.39■■■□□ 2.94
Upf1Q9EPU0 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC33.33■■■□□ 2.93
Upf1Q9EPU0 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC33.33■■■□□ 2.93
Upf1Q9EPU0 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC33.32■■■□□ 2.92
Upf1Q9EPU0 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC33.31■■■□□ 2.92
Upf1Q9EPU0 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC33.29■■■□□ 2.92
Upf1Q9EPU0 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC33.26■■■□□ 2.92
Upf1Q9EPU0 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC33.26■■■□□ 2.91
Upf1Q9EPU0 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC33.25■■■□□ 2.91
Upf1Q9EPU0 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
Upf1Q9EPU0 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC33.16■■■□□ 2.9
Upf1Q9EPU0 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC33.16■■■□□ 2.9
Upf1Q9EPU0 Gm16148-201ENSMUST00000119653 893 ntBASIC33.12■■■□□ 2.89
Upf1Q9EPU0 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC33.12■■■□□ 2.89
Upf1Q9EPU0 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC33.11■■■□□ 2.89
Upf1Q9EPU0 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC33.11■■■□□ 2.89
Upf1Q9EPU0 AC166822.3-201ENSMUST00000227394 661 ntBASIC33.09■■■□□ 2.89
Upf1Q9EPU0 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
Upf1Q9EPU0 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC33.01■■■□□ 2.87
Upf1Q9EPU0 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC33.01■■■□□ 2.87
Upf1Q9EPU0 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC32.98■■■□□ 2.87
Upf1Q9EPU0 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
Upf1Q9EPU0 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC32.95■■■□□ 2.87
Upf1Q9EPU0 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.87
Upf1Q9EPU0 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC32.95■■■□□ 2.86
Upf1Q9EPU0 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC32.91■■■□□ 2.86
Upf1Q9EPU0 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC32.9■■■□□ 2.86
Upf1Q9EPU0 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC32.9■■■□□ 2.86
Upf1Q9EPU0 Gm45855-201ENSMUST00000212546 880 ntBASIC32.89■■■□□ 2.86
Upf1Q9EPU0 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC32.89■■■□□ 2.86
Upf1Q9EPU0 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC32.82■■■□□ 2.84
Upf1Q9EPU0 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC32.82■■■□□ 2.84
Upf1Q9EPU0 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
Upf1Q9EPU0 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC32.79■■■□□ 2.84
Upf1Q9EPU0 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC32.77■■■□□ 2.84
Upf1Q9EPU0 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC32.76■■■□□ 2.84
Upf1Q9EPU0 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
Upf1Q9EPU0 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
Upf1Q9EPU0 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC32.73■■■□□ 2.83
Upf1Q9EPU0 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC32.72■■■□□ 2.83
Upf1Q9EPU0 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
Upf1Q9EPU0 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC32.67■■■□□ 2.82
Upf1Q9EPU0 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC32.66■■■□□ 2.82
Upf1Q9EPU0 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC32.66■■■□□ 2.82
Upf1Q9EPU0 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC32.65■■■□□ 2.82
Upf1Q9EPU0 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC32.64■■■□□ 2.82
Upf1Q9EPU0 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC32.63■■■□□ 2.81
Upf1Q9EPU0 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
Upf1Q9EPU0 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC32.59■■■□□ 2.81
Upf1Q9EPU0 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
Upf1Q9EPU0 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
Upf1Q9EPU0 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.79
Upf1Q9EPU0 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
Upf1Q9EPU0 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC32.5■■■□□ 2.79
Upf1Q9EPU0 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC32.44■■■□□ 2.78
Upf1Q9EPU0 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
Upf1Q9EPU0 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC32.43■■■□□ 2.78
Upf1Q9EPU0 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
Upf1Q9EPU0 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC32.42■■■□□ 2.78
Upf1Q9EPU0 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
Upf1Q9EPU0 AL845457.1-201ENSMUST00000197244 68 ntBASIC32.41■■■□□ 2.78
Upf1Q9EPU0 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
Upf1Q9EPU0 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
Upf1Q9EPU0 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC32.39■■■□□ 2.78
Upf1Q9EPU0 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC32.37■■■□□ 2.77
Upf1Q9EPU0 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC32.35■■■□□ 2.77
Upf1Q9EPU0 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC32.34■■■□□ 2.77
Upf1Q9EPU0 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC32.32■■■□□ 2.76
Upf1Q9EPU0 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC32.32■■■□□ 2.76
Upf1Q9EPU0 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC32.31■■■□□ 2.76
Upf1Q9EPU0 Gm9397-201ENSMUST00000200125 605 ntBASIC32.31■■■□□ 2.76
Upf1Q9EPU0 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC32.3■■■□□ 2.76
Upf1Q9EPU0 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
Upf1Q9EPU0 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC32.28■■■□□ 2.76
Upf1Q9EPU0 Peli2-204ENSMUST00000226513 1320 ntBASIC32.27■■■□□ 2.76
Upf1Q9EPU0 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
Retrieved 100 of 76,532 protein–RNA pairs in 14.2 ms