Protein–RNA interactions for Protein: Q99MA9

Nkx6-1, Homeobox protein Nkx-6.1, mousemouse

Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx6-1Q99MA9 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC26,68■■□□□ 1,86
Nkx6-1Q99MA9 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC26,65■■□□□ 1,86
Nkx6-1Q99MA9 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC26,65■■□□□ 1,86
Nkx6-1Q99MA9 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC26,62■■□□□ 1,85
Nkx6-1Q99MA9 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC26,6■■□□□ 1,85
Nkx6-1Q99MA9 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC26,57■■□□□ 1,84
Nkx6-1Q99MA9 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC26,56■■□□□ 1,84
Nkx6-1Q99MA9 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC26,54■■□□□ 1,84
Nkx6-1Q99MA9 Zfp131-205ENSMUST00000223812 663 ntBASIC26,51■■□□□ 1,83
Nkx6-1Q99MA9 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC26,5■■□□□ 1,83
Nkx6-1Q99MA9 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC26,46■■□□□ 1,83
Nkx6-1Q99MA9 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC26,44■■□□□ 1,82
Nkx6-1Q99MA9 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC26,43■■□□□ 1,82
Nkx6-1Q99MA9 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC26,42■■□□□ 1,82
Nkx6-1Q99MA9 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC26,41■■□□□ 1,82
Nkx6-1Q99MA9 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC26,4■■□□□ 1,82
Nkx6-1Q99MA9 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC26,4■■□□□ 1,82
Nkx6-1Q99MA9 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC26,38■■□□□ 1,81
Nkx6-1Q99MA9 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC26,37■■□□□ 1,81
Nkx6-1Q99MA9 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC26,36■■□□□ 1,81
Nkx6-1Q99MA9 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC26,32■■□□□ 1,8
Nkx6-1Q99MA9 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC26,3■■□□□ 1,8
Nkx6-1Q99MA9 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC26,3■■□□□ 1,8
Nkx6-1Q99MA9 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC26,29■■□□□ 1,8
Nkx6-1Q99MA9 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC26,25■■□□□ 1,79
Nkx6-1Q99MA9 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC26,23■■□□□ 1,79
Nkx6-1Q99MA9 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC26,22■■□□□ 1,79
Nkx6-1Q99MA9 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC26,19■■□□□ 1,78
Nkx6-1Q99MA9 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC26,18■■□□□ 1,78
Nkx6-1Q99MA9 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC26,16■■□□□ 1,78
Nkx6-1Q99MA9 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC26,16■■□□□ 1,78
Nkx6-1Q99MA9 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC26,16■■□□□ 1,78
Nkx6-1Q99MA9 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC26,15■■□□□ 1,78
Nkx6-1Q99MA9 Gm42596-201ENSMUST00000196305 1958 ntBASIC26,13■■□□□ 1,77
Nkx6-1Q99MA9 CT025624.2-201ENSMUST00000223609 1909 ntBASIC26,12■■□□□ 1,77
Nkx6-1Q99MA9 AC166822.3-201ENSMUST00000227394 661 ntBASIC26,11■■□□□ 1,77
Nkx6-1Q99MA9 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC26,08■■□□□ 1,77
Nkx6-1Q99MA9 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC26,08■■□□□ 1,77
Nkx6-1Q99MA9 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC26,08■■□□□ 1,77
Nkx6-1Q99MA9 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC26,07■■□□□ 1,76
Nkx6-1Q99MA9 Gm10524-201ENSMUST00000181931 1893 ntBASIC26,06■■□□□ 1,76
Nkx6-1Q99MA9 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC26,05■■□□□ 1,76
Nkx6-1Q99MA9 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC26,04■■□□□ 1,76
Nkx6-1Q99MA9 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC26,03■■□□□ 1,76
Nkx6-1Q99MA9 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC26,01■■□□□ 1,75
Nkx6-1Q99MA9 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC26■■□□□ 1,75
Nkx6-1Q99MA9 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC25,95■■□□□ 1,74
Nkx6-1Q99MA9 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC25,93■■□□□ 1,74
Nkx6-1Q99MA9 AL845457.1-201ENSMUST00000197244 68 ntBASIC25,92■■□□□ 1,74
Nkx6-1Q99MA9 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC25,91■■□□□ 1,74
Nkx6-1Q99MA9 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC25,9■■□□□ 1,74
Nkx6-1Q99MA9 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC25,84■■□□□ 1,73
Nkx6-1Q99MA9 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC25,84■■□□□ 1,73
Nkx6-1Q99MA9 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC25,84■■□□□ 1,73
Nkx6-1Q99MA9 Gm16148-201ENSMUST00000119653 893 ntBASIC25,83■■□□□ 1,73
Nkx6-1Q99MA9 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC25,81■■□□□ 1,72
Nkx6-1Q99MA9 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC25,81■■□□□ 1,72
Nkx6-1Q99MA9 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC25,81■■□□□ 1,72
Nkx6-1Q99MA9 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC25,78■■□□□ 1,72
Nkx6-1Q99MA9 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC25,78■■□□□ 1,72
Nkx6-1Q99MA9 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC25,76■■□□□ 1,71
Nkx6-1Q99MA9 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC25,75■■□□□ 1,71
Nkx6-1Q99MA9 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC25,74■■□□□ 1,71
Nkx6-1Q99MA9 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC25,72■■□□□ 1,71
Nkx6-1Q99MA9 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC25,71■■□□□ 1,71
Nkx6-1Q99MA9 Tdp2-203ENSMUST00000223804 1136 ntBASIC25,71■■□□□ 1,71
Nkx6-1Q99MA9 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC25,71■■□□□ 1,71
Nkx6-1Q99MA9 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC25,7■■□□□ 1,7
Nkx6-1Q99MA9 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC25,65■■□□□ 1,7
Nkx6-1Q99MA9 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC25,65■■□□□ 1,7
Nkx6-1Q99MA9 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC25,63■■□□□ 1,69
Nkx6-1Q99MA9 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC25,62■■□□□ 1,69
Nkx6-1Q99MA9 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC25,61■■□□□ 1,69
Nkx6-1Q99MA9 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC25,61■■□□□ 1,69
Nkx6-1Q99MA9 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC25,6■■□□□ 1,69
Nkx6-1Q99MA9 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC25,57■■□□□ 1,68
Nkx6-1Q99MA9 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC25,56■■□□□ 1,68
Nkx6-1Q99MA9 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC25,55■■□□□ 1,68
Nkx6-1Q99MA9 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC25,55■■□□□ 1,68
Nkx6-1Q99MA9 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC25,53■■□□□ 1,68
Nkx6-1Q99MA9 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC25,51■■□□□ 1,67
Nkx6-1Q99MA9 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC25,5■■□□□ 1,67
Nkx6-1Q99MA9 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC25,5■■□□□ 1,67
Nkx6-1Q99MA9 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC25,49■■□□□ 1,67
Nkx6-1Q99MA9 Peli2-204ENSMUST00000226513 1320 ntBASIC25,48■■□□□ 1,67
Nkx6-1Q99MA9 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC25,48■■□□□ 1,67
Nkx6-1Q99MA9 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC25,48■■□□□ 1,67
Nkx6-1Q99MA9 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC25,47■■□□□ 1,67
Nkx6-1Q99MA9 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC25,45■■□□□ 1,66
Nkx6-1Q99MA9 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC25,44■■□□□ 1,66
Nkx6-1Q99MA9 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC25,44■■□□□ 1,66
Nkx6-1Q99MA9 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC25,43■■□□□ 1,66
Nkx6-1Q99MA9 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC25,43■■□□□ 1,66
Nkx6-1Q99MA9 Gm45855-201ENSMUST00000212546 880 ntBASIC25,43■■□□□ 1,66
Nkx6-1Q99MA9 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC25,42■■□□□ 1,66
Nkx6-1Q99MA9 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC25,41■■□□□ 1,66
Nkx6-1Q99MA9 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC25,41■■□□□ 1,66
Nkx6-1Q99MA9 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC25,4■■□□□ 1,66
Nkx6-1Q99MA9 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC25,4■■□□□ 1,66
Nkx6-1Q99MA9 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC25,36■■□□□ 1,65
Retrieved 100 of 76,532 protein–RNA pairs in 11,3 ms