Protein–RNA interactions for Protein: Q8R1T1

Chmp7, Charged multivesicular body protein 7, mousemouse

Predictions only

Length 451 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp7Q8R1T1 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC36,62■■■■□ 3,45
Chmp7Q8R1T1 CT025624.2-201ENSMUST00000223609 1909 ntBASIC36,61■■■■□ 3,45
Chmp7Q8R1T1 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC36,6■■■■□ 3,45
Chmp7Q8R1T1 Gm42596-201ENSMUST00000196305 1958 ntBASIC36,57■■■■□ 3,44
Chmp7Q8R1T1 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC36,5■■■■□ 3,43
Chmp7Q8R1T1 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC36,45■■■■□ 3,43
Chmp7Q8R1T1 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC36,43■■■■□ 3,42
Chmp7Q8R1T1 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC36,42■■■■□ 3,42
Chmp7Q8R1T1 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC36,4■■■■□ 3,42
Chmp7Q8R1T1 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC36,38■■■■□ 3,41
Chmp7Q8R1T1 Gm27322-201ENSMUST00000184007 104 ntBASIC36,36■■■■□ 3,41
Chmp7Q8R1T1 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC36,3■■■■□ 3,4
Chmp7Q8R1T1 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC36,27■■■■□ 3,4
Chmp7Q8R1T1 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC36,25■■■■□ 3,39
Chmp7Q8R1T1 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC36,19■■■■□ 3,38
Chmp7Q8R1T1 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC36,14■■■■□ 3,38
Chmp7Q8R1T1 Gm24804-201ENSMUST00000174982 85 ntBASIC36,04■■■■□ 3,36
Chmp7Q8R1T1 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC36,03■■■■□ 3,36
Chmp7Q8R1T1 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC36,01■■■■□ 3,35
Chmp7Q8R1T1 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC35,96■■■■□ 3,35
Chmp7Q8R1T1 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC35,94■■■■□ 3,34
Chmp7Q8R1T1 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC35,93■■■■□ 3,34
Chmp7Q8R1T1 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC35,9■■■■□ 3,34
Chmp7Q8R1T1 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC35,89■■■■□ 3,34
Chmp7Q8R1T1 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC35,88■■■■□ 3,33
Chmp7Q8R1T1 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC35,85■■■■□ 3,33
Chmp7Q8R1T1 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC35,81■■■■□ 3,32
Chmp7Q8R1T1 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC35,75■■■■□ 3,31
Chmp7Q8R1T1 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC35,73■■■■□ 3,31
Chmp7Q8R1T1 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC35,68■■■■□ 3,3
Chmp7Q8R1T1 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC35,67■■■■□ 3,3
Chmp7Q8R1T1 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC35,65■■■■□ 3,3
Chmp7Q8R1T1 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC35,63■■■■□ 3,29
Chmp7Q8R1T1 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC35,62■■■■□ 3,29
Chmp7Q8R1T1 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC35,57■■■■□ 3,29
Chmp7Q8R1T1 AC166822.3-201ENSMUST00000227394 661 ntBASIC35,57■■■■□ 3,28
Chmp7Q8R1T1 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC35,55■■■■□ 3,28
Chmp7Q8R1T1 AL845457.1-201ENSMUST00000197244 68 ntBASIC35,55■■■■□ 3,28
Chmp7Q8R1T1 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC35,52■■■■□ 3,28
Chmp7Q8R1T1 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC35,52■■■■□ 3,28
Chmp7Q8R1T1 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC35,52■■■■□ 3,28
Chmp7Q8R1T1 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC35,52■■■■□ 3,28
Chmp7Q8R1T1 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC35,48■■■■□ 3,27
Chmp7Q8R1T1 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC35,47■■■■□ 3,27
Chmp7Q8R1T1 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC35,46■■■■□ 3,27
Chmp7Q8R1T1 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC35,45■■■■□ 3,27
Chmp7Q8R1T1 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC35,44■■■■□ 3,26
Chmp7Q8R1T1 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC35,41■■■■□ 3,26
Chmp7Q8R1T1 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC35,41■■■■□ 3,26
Chmp7Q8R1T1 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC35,37■■■■□ 3,25
Chmp7Q8R1T1 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC35,36■■■■□ 3,25
Chmp7Q8R1T1 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC35,33■■■■□ 3,25
Chmp7Q8R1T1 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC35,32■■■■□ 3,24
Chmp7Q8R1T1 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC35,3■■■■□ 3,24
Chmp7Q8R1T1 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC35,25■■■■□ 3,23
Chmp7Q8R1T1 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC35,25■■■■□ 3,23
Chmp7Q8R1T1 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC35,22■■■■□ 3,23
Chmp7Q8R1T1 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC35,21■■■■□ 3,23
Chmp7Q8R1T1 Zfp131-205ENSMUST00000223812 663 ntBASIC35,21■■■■□ 3,23
Chmp7Q8R1T1 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC35,15■■■■□ 3,22
Chmp7Q8R1T1 Zfp131-207ENSMUST00000224946 1783 ntBASIC35,14■■■■□ 3,22
Chmp7Q8R1T1 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC35,12■■■■□ 3,21
Chmp7Q8R1T1 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC35,1■■■■□ 3,21
Chmp7Q8R1T1 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC35,08■■■■□ 3,21
Chmp7Q8R1T1 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC35,03■■■■□ 3,2
Chmp7Q8R1T1 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC35,01■■■■□ 3,19
Chmp7Q8R1T1 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC34,94■■■■□ 3,18
Chmp7Q8R1T1 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC34,93■■■■□ 3,18
Chmp7Q8R1T1 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC34,93■■■■□ 3,18
Chmp7Q8R1T1 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC34,9■■■■□ 3,18
Chmp7Q8R1T1 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC34,89■■■■□ 3,18
Chmp7Q8R1T1 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC34,87■■■■□ 3,17
Chmp7Q8R1T1 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC34,85■■■■□ 3,17
Chmp7Q8R1T1 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC34,83■■■■□ 3,17
Chmp7Q8R1T1 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC34,83■■■■□ 3,17
Chmp7Q8R1T1 Gm16148-201ENSMUST00000119653 893 ntBASIC34,82■■■■□ 3,16
Chmp7Q8R1T1 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC34,82■■■■□ 3,16
Chmp7Q8R1T1 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC34,8■■■■□ 3,16
Chmp7Q8R1T1 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC34,8■■■■□ 3,16
Chmp7Q8R1T1 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC34,76■■■■□ 3,16
Chmp7Q8R1T1 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC34,74■■■■□ 3,15
Chmp7Q8R1T1 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC34,73■■■■□ 3,15
Chmp7Q8R1T1 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC34,72■■■■□ 3,15
Chmp7Q8R1T1 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC34,72■■■■□ 3,15
Chmp7Q8R1T1 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC34,7■■■■□ 3,15
Chmp7Q8R1T1 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC34,69■■■■□ 3,14
Chmp7Q8R1T1 Peli2-204ENSMUST00000226513 1320 ntBASIC34,69■■■■□ 3,14
Chmp7Q8R1T1 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC34,67■■■■□ 3,14
Chmp7Q8R1T1 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC34,66■■■■□ 3,14
Chmp7Q8R1T1 Mipep-204ENSMUST00000225043 1548 ntBASIC34,65■■■■□ 3,14
Chmp7Q8R1T1 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC34,64■■■■□ 3,14
Chmp7Q8R1T1 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC34,61■■■■□ 3,13
Chmp7Q8R1T1 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC34,61■■■■□ 3,13
Chmp7Q8R1T1 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC34,59■■■■□ 3,13
Chmp7Q8R1T1 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC34,57■■■■□ 3,13
Chmp7Q8R1T1 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC34,57■■■■□ 3,12
Chmp7Q8R1T1 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC34,57■■■■□ 3,12
Chmp7Q8R1T1 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC34,52■■■■□ 3,12
Chmp7Q8R1T1 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC34,5■■■■□ 3,11
Chmp7Q8R1T1 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC34,5■■■■□ 3,11
Retrieved 100 of 76,532 protein–RNA pairs in 8 ms