Protein–RNA interactions for Protein: Q8K2I2

Cchcr1, Coiled-coil alpha-helical rod protein 1, mousemouse

Predictions only

Length 770 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cchcr1Q8K2I2 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC32.75■■■□□ 2.83
Cchcr1Q8K2I2 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
Cchcr1Q8K2I2 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC32.74■■■□□ 2.83
Cchcr1Q8K2I2 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC32.71■■■□□ 2.83
Cchcr1Q8K2I2 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
Cchcr1Q8K2I2 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC32.54■■■□□ 2.8
Cchcr1Q8K2I2 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC32.45■■■□□ 2.79
Cchcr1Q8K2I2 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
Cchcr1Q8K2I2 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC32.41■■■□□ 2.78
Cchcr1Q8K2I2 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC32.41■■■□□ 2.78
Cchcr1Q8K2I2 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC32.4■■■□□ 2.78
Cchcr1Q8K2I2 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC32.39■■■□□ 2.78
Cchcr1Q8K2I2 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC32.39■■■□□ 2.78
Cchcr1Q8K2I2 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
Cchcr1Q8K2I2 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC32.29■■■□□ 2.76
Cchcr1Q8K2I2 Rab21-202ENSMUST00000218831 843 ntBASIC32.27■■■□□ 2.76
Cchcr1Q8K2I2 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC32.26■■■□□ 2.76
Cchcr1Q8K2I2 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
Cchcr1Q8K2I2 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
Cchcr1Q8K2I2 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
Cchcr1Q8K2I2 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
Cchcr1Q8K2I2 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC32.17■■■□□ 2.74
Cchcr1Q8K2I2 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
Cchcr1Q8K2I2 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC32.15■■■□□ 2.74
Cchcr1Q8K2I2 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
Cchcr1Q8K2I2 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC32.1■■■□□ 2.73
Cchcr1Q8K2I2 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
Cchcr1Q8K2I2 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
Cchcr1Q8K2I2 Zfp131-207ENSMUST00000224946 1783 ntBASIC32.04■■■□□ 2.72
Cchcr1Q8K2I2 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
Cchcr1Q8K2I2 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC32.04■■■□□ 2.72
Cchcr1Q8K2I2 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
Cchcr1Q8K2I2 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC31.99■■■□□ 2.71
Cchcr1Q8K2I2 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC31.99■■■□□ 2.71
Cchcr1Q8K2I2 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC31.96■■■□□ 2.71
Cchcr1Q8K2I2 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC31.94■■■□□ 2.7
Cchcr1Q8K2I2 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC31.94■■■□□ 2.7
Cchcr1Q8K2I2 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
Cchcr1Q8K2I2 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC31.93■■■□□ 2.7
Cchcr1Q8K2I2 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC31.9■■■□□ 2.7
Cchcr1Q8K2I2 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
Cchcr1Q8K2I2 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
Cchcr1Q8K2I2 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
Cchcr1Q8K2I2 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC31.83■■■□□ 2.69
Cchcr1Q8K2I2 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Cchcr1Q8K2I2 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC31.77■■■□□ 2.68
Cchcr1Q8K2I2 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC31.77■■■□□ 2.68
Cchcr1Q8K2I2 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
Cchcr1Q8K2I2 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
Cchcr1Q8K2I2 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC31.72■■■□□ 2.67
Cchcr1Q8K2I2 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC31.72■■■□□ 2.67
Cchcr1Q8K2I2 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC31.71■■■□□ 2.67
Cchcr1Q8K2I2 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
Cchcr1Q8K2I2 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
Cchcr1Q8K2I2 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
Cchcr1Q8K2I2 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC31.59■■■□□ 2.65
Cchcr1Q8K2I2 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Cchcr1Q8K2I2 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Cchcr1Q8K2I2 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Cchcr1Q8K2I2 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
Cchcr1Q8K2I2 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
Cchcr1Q8K2I2 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC31.54■■■□□ 2.64
Cchcr1Q8K2I2 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
Cchcr1Q8K2I2 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Cchcr1Q8K2I2 Gm2415-204ENSMUST00000190235 2004 ntBASIC31.46■■■□□ 2.63
Cchcr1Q8K2I2 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC31.44■■■□□ 2.62
Cchcr1Q8K2I2 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC31.44■■■□□ 2.62
Cchcr1Q8K2I2 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
Cchcr1Q8K2I2 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
Cchcr1Q8K2I2 Gm25262-201ENSMUST00000174934 133 ntBASIC31.43■■■□□ 2.62
Cchcr1Q8K2I2 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC31.41■■■□□ 2.62
Cchcr1Q8K2I2 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC31.37■■■□□ 2.61
Cchcr1Q8K2I2 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
Cchcr1Q8K2I2 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
Cchcr1Q8K2I2 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC31.29■■■□□ 2.6
Cchcr1Q8K2I2 AL845457.1-201ENSMUST00000197244 68 ntBASIC31.28■■■□□ 2.6
Cchcr1Q8K2I2 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC31.28■■■□□ 2.6
Cchcr1Q8K2I2 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC31.26■■■□□ 2.59
Cchcr1Q8K2I2 Gm6658-202ENSMUST00000209493 1885 ntBASIC31.25■■■□□ 2.59
Cchcr1Q8K2I2 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Cchcr1Q8K2I2 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC31.24■■■□□ 2.59
Cchcr1Q8K2I2 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
Cchcr1Q8K2I2 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Cchcr1Q8K2I2 Mipep-204ENSMUST00000225043 1548 ntBASIC31.13■■■□□ 2.57
Cchcr1Q8K2I2 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Cchcr1Q8K2I2 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Cchcr1Q8K2I2 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC31.08■■■□□ 2.57
Cchcr1Q8K2I2 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Cchcr1Q8K2I2 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC31.05■■■□□ 2.56
Cchcr1Q8K2I2 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
Cchcr1Q8K2I2 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC31.04■■■□□ 2.56
Cchcr1Q8K2I2 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC31.04■■■□□ 2.56
Cchcr1Q8K2I2 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC31.01■■■□□ 2.55
Cchcr1Q8K2I2 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
Cchcr1Q8K2I2 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC30.98■■■□□ 2.55
Cchcr1Q8K2I2 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
Cchcr1Q8K2I2 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
Cchcr1Q8K2I2 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC30.96■■■□□ 2.55
Cchcr1Q8K2I2 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC30.94■■■□□ 2.54
Cchcr1Q8K2I2 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
Retrieved 100 of 76,532 protein–RNA pairs in 46.2 ms