Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC33.33■■■□□ 2.93
Trim56Q80VI1 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC33.32■■■□□ 2.92
Trim56Q80VI1 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC33.31■■■□□ 2.92
Trim56Q80VI1 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC33.3■■■□□ 2.92
Trim56Q80VI1 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC33.28■■■□□ 2.92
Trim56Q80VI1 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC33.26■■■□□ 2.92
Trim56Q80VI1 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC33.24■■■□□ 2.91
Trim56Q80VI1 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC33.19■■■□□ 2.9
Trim56Q80VI1 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC33.18■■■□□ 2.9
Trim56Q80VI1 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
Trim56Q80VI1 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC33.15■■■□□ 2.9
Trim56Q80VI1 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC33.14■■■□□ 2.9
Trim56Q80VI1 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC33.09■■■□□ 2.89
Trim56Q80VI1 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC33.07■■■□□ 2.88
Trim56Q80VI1 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC33.04■■■□□ 2.88
Trim56Q80VI1 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC33.03■■■□□ 2.88
Trim56Q80VI1 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC32.99■■■□□ 2.87
Trim56Q80VI1 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.87
Trim56Q80VI1 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC32.93■■■□□ 2.86
Trim56Q80VI1 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC32.89■■■□□ 2.86
Trim56Q80VI1 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC32.89■■■□□ 2.86
Trim56Q80VI1 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
Trim56Q80VI1 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
Trim56Q80VI1 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC32.81■■■□□ 2.84
Trim56Q80VI1 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
Trim56Q80VI1 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC32.78■■■□□ 2.84
Trim56Q80VI1 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
Trim56Q80VI1 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
Trim56Q80VI1 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.83
Trim56Q80VI1 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC32.67■■■□□ 2.82
Trim56Q80VI1 Gm26115-201ENSMUST00000175605 87 ntBASIC32.66■■■□□ 2.82
Trim56Q80VI1 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
Trim56Q80VI1 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
Trim56Q80VI1 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC32.63■■■□□ 2.81
Trim56Q80VI1 Gm8109-201ENSMUST00000194076 746 ntBASIC32.61■■■□□ 2.81
Trim56Q80VI1 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC32.58■■■□□ 2.81
Trim56Q80VI1 Gm17082-201ENSMUST00000166043 1091 ntBASIC32.57■■■□□ 2.8
Trim56Q80VI1 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
Trim56Q80VI1 Zfp131-207ENSMUST00000224946 1783 ntBASIC32.55■■■□□ 2.8
Trim56Q80VI1 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC32.5■■■□□ 2.79
Trim56Q80VI1 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
Trim56Q80VI1 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.78
Trim56Q80VI1 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
Trim56Q80VI1 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
Trim56Q80VI1 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC32.38■■■□□ 2.77
Trim56Q80VI1 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC32.36■■■□□ 2.77
Trim56Q80VI1 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC32.36■■■□□ 2.77
Trim56Q80VI1 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC32.35■■■□□ 2.77
Trim56Q80VI1 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
Trim56Q80VI1 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
Trim56Q80VI1 Gm27322-201ENSMUST00000184007 104 ntBASIC32.31■■■□□ 2.76
Trim56Q80VI1 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC32.3■■■□□ 2.76
Trim56Q80VI1 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
Trim56Q80VI1 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
Trim56Q80VI1 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC32.28■■■□□ 2.76
Trim56Q80VI1 AL845457.1-201ENSMUST00000197244 68 ntBASIC32.28■■■□□ 2.76
Trim56Q80VI1 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC32.25■■■□□ 2.75
Trim56Q80VI1 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
Trim56Q80VI1 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
Trim56Q80VI1 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC32.2■■■□□ 2.75
Trim56Q80VI1 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
Trim56Q80VI1 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
Trim56Q80VI1 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC32.17■■■□□ 2.74
Trim56Q80VI1 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
Trim56Q80VI1 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
Trim56Q80VI1 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC32.04■■■□□ 2.72
Trim56Q80VI1 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC31.99■■■□□ 2.71
Trim56Q80VI1 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC31.95■■■□□ 2.7
Trim56Q80VI1 AC166822.3-201ENSMUST00000227394 661 ntBASIC31.93■■■□□ 2.7
Trim56Q80VI1 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
Trim56Q80VI1 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
Trim56Q80VI1 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC31.9■■■□□ 2.7
Trim56Q80VI1 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
Trim56Q80VI1 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
Trim56Q80VI1 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
Trim56Q80VI1 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Trim56Q80VI1 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Trim56Q80VI1 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Trim56Q80VI1 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Trim56Q80VI1 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC31.8■■■□□ 2.68
Trim56Q80VI1 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
Trim56Q80VI1 Mipep-204ENSMUST00000225043 1548 ntBASIC31.78■■■□□ 2.68
Trim56Q80VI1 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
Trim56Q80VI1 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC31.74■■■□□ 2.67
Trim56Q80VI1 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC31.73■■■□□ 2.67
Trim56Q80VI1 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
Trim56Q80VI1 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
Trim56Q80VI1 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
Trim56Q80VI1 Gm24804-201ENSMUST00000174982 85 ntBASIC31.64■■■□□ 2.66
Trim56Q80VI1 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC31.63■■■□□ 2.65
Trim56Q80VI1 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Trim56Q80VI1 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Trim56Q80VI1 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC31.58■■■□□ 2.65
Trim56Q80VI1 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
Trim56Q80VI1 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
Trim56Q80VI1 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
Trim56Q80VI1 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC31.53■■■□□ 2.64
Trim56Q80VI1 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
Trim56Q80VI1 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC31.49■■■□□ 2.63
Trim56Q80VI1 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Retrieved 100 of 76,532 protein–RNA pairs in 13.2 ms