Protein–RNA interactions for Protein: Q78T54

Vma21, Vacuolar ATPase assembly integral membrane protein Vma21, mousemouse

Predictions only

Length 101 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vma21Q78T54 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Vma21Q78T54 Gm25238-201ENSMUST00000174914 89 ntBASIC22.19■■□□□ 1.14
Vma21Q78T54 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC22.18■■□□□ 1.14
Vma21Q78T54 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC22.18■■□□□ 1.14
Vma21Q78T54 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC22.16■■□□□ 1.14
Vma21Q78T54 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
Vma21Q78T54 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC22.13■■□□□ 1.13
Vma21Q78T54 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Vma21Q78T54 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC22.06■■□□□ 1.12
Vma21Q78T54 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
Vma21Q78T54 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Vma21Q78T54 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Vma21Q78T54 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
Vma21Q78T54 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Vma21Q78T54 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Vma21Q78T54 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Vma21Q78T54 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC21.91■■□□□ 1.1
Vma21Q78T54 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Vma21Q78T54 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC21.9■■□□□ 1.1
Vma21Q78T54 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Vma21Q78T54 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
Vma21Q78T54 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Vma21Q78T54 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Vma21Q78T54 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
Vma21Q78T54 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC21.83■■□□□ 1.09
Vma21Q78T54 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Vma21Q78T54 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC21.81■■□□□ 1.08
Vma21Q78T54 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Vma21Q78T54 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Vma21Q78T54 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Vma21Q78T54 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Vma21Q78T54 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Vma21Q78T54 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC21.7■■□□□ 1.06
Vma21Q78T54 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vma21Q78T54 Zfp131-207ENSMUST00000224946 1783 ntBASIC21.69■■□□□ 1.06
Vma21Q78T54 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
Vma21Q78T54 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
Vma21Q78T54 Rab21-202ENSMUST00000218831 843 ntBASIC21.65■■□□□ 1.06
Vma21Q78T54 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
Vma21Q78T54 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Vma21Q78T54 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Vma21Q78T54 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC21.59■■□□□ 1.05
Vma21Q78T54 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
Vma21Q78T54 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Vma21Q78T54 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC21.54■■□□□ 1.04
Vma21Q78T54 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Vma21Q78T54 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Vma21Q78T54 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Vma21Q78T54 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC21.51■■□□□ 1.03
Vma21Q78T54 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Vma21Q78T54 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Vma21Q78T54 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Vma21Q78T54 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC21.49■■□□□ 1.03
Vma21Q78T54 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC21.49■■□□□ 1.03
Vma21Q78T54 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Vma21Q78T54 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Vma21Q78T54 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
Vma21Q78T54 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Vma21Q78T54 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Vma21Q78T54 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Vma21Q78T54 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
Vma21Q78T54 Gm2415-204ENSMUST00000190235 2004 ntBASIC21.43■■□□□ 1.02
Vma21Q78T54 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Vma21Q78T54 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Vma21Q78T54 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Vma21Q78T54 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
Vma21Q78T54 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Vma21Q78T54 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Vma21Q78T54 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Vma21Q78T54 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Vma21Q78T54 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Vma21Q78T54 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC21.34■■□□□ 1.01
Vma21Q78T54 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
Vma21Q78T54 Gm6658-202ENSMUST00000209493 1885 ntBASIC21.32■■□□□ 1
Vma21Q78T54 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Vma21Q78T54 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Vma21Q78T54 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC21.27■■□□□ 1
Vma21Q78T54 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Vma21Q78T54 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
Vma21Q78T54 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC21.23■□□□□ 0.99
Vma21Q78T54 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC21.23■□□□□ 0.99
Vma21Q78T54 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Vma21Q78T54 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Vma21Q78T54 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Vma21Q78T54 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Vma21Q78T54 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Vma21Q78T54 AC153504.1-201ENSMUST00000218379 2290 ntBASIC21.17■□□□□ 0.98
Vma21Q78T54 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Vma21Q78T54 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC21.16■□□□□ 0.98
Vma21Q78T54 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Vma21Q78T54 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Vma21Q78T54 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Vma21Q78T54 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Vma21Q78T54 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Vma21Q78T54 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Vma21Q78T54 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Vma21Q78T54 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Vma21Q78T54 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Vma21Q78T54 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Vma21Q78T54 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 13.6 ms