Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
Col11a1Q61245 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
Col11a1Q61245 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC32.9■■■□□ 2.86
Col11a1Q61245 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC32.86■■■□□ 2.85
Col11a1Q61245 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC32.85■■■□□ 2.85
Col11a1Q61245 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
Col11a1Q61245 Zfp131-205ENSMUST00000223812 663 ntBASIC32.78■■■□□ 2.84
Col11a1Q61245 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC32.77■■■□□ 2.84
Col11a1Q61245 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
Col11a1Q61245 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC32.72■■■□□ 2.83
Col11a1Q61245 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC32.7■■■□□ 2.82
Col11a1Q61245 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
Col11a1Q61245 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
Col11a1Q61245 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
Col11a1Q61245 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
Col11a1Q61245 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC32.57■■■□□ 2.8
Col11a1Q61245 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
Col11a1Q61245 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC32.53■■■□□ 2.8
Col11a1Q61245 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
Col11a1Q61245 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
Col11a1Q61245 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
Col11a1Q61245 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
Col11a1Q61245 Gm42596-201ENSMUST00000196305 1958 ntBASIC32.39■■■□□ 2.78
Col11a1Q61245 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
Col11a1Q61245 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC32.37■■■□□ 2.77
Col11a1Q61245 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC32.35■■■□□ 2.77
Col11a1Q61245 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
Col11a1Q61245 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC32.34■■■□□ 2.77
Col11a1Q61245 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
Col11a1Q61245 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
Col11a1Q61245 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
Col11a1Q61245 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
Col11a1Q61245 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
Col11a1Q61245 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
Col11a1Q61245 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC32.23■■■□□ 2.75
Col11a1Q61245 AC166822.3-201ENSMUST00000227394 661 ntBASIC32.2■■■□□ 2.75
Col11a1Q61245 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC32.19■■■□□ 2.74
Col11a1Q61245 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
Col11a1Q61245 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
Col11a1Q61245 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC32.15■■■□□ 2.74
Col11a1Q61245 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
Col11a1Q61245 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
Col11a1Q61245 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
Col11a1Q61245 CT025624.2-201ENSMUST00000223609 1909 ntBASIC32.09■■■□□ 2.73
Col11a1Q61245 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC32.09■■■□□ 2.73
Col11a1Q61245 Gm10524-201ENSMUST00000181931 1893 ntBASIC32.07■■■□□ 2.72
Col11a1Q61245 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC32.06■■■□□ 2.72
Col11a1Q61245 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC32.06■■■□□ 2.72
Col11a1Q61245 AL845457.1-201ENSMUST00000197244 68 ntBASIC32.04■■■□□ 2.72
Col11a1Q61245 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
Col11a1Q61245 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
Col11a1Q61245 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
Col11a1Q61245 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
Col11a1Q61245 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC31.89■■■□□ 2.69
Col11a1Q61245 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.69
Col11a1Q61245 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC31.87■■■□□ 2.69
Col11a1Q61245 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC31.84■■■□□ 2.69
Col11a1Q61245 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
Col11a1Q61245 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC31.83■■■□□ 2.69
Col11a1Q61245 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC31.83■■■□□ 2.69
Col11a1Q61245 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Col11a1Q61245 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC31.78■■■□□ 2.68
Col11a1Q61245 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC31.75■■■□□ 2.67
Col11a1Q61245 Gm16148-201ENSMUST00000119653 893 ntBASIC31.71■■■□□ 2.67
Col11a1Q61245 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC31.7■■■□□ 2.67
Col11a1Q61245 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC31.67■■■□□ 2.66
Col11a1Q61245 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
Col11a1Q61245 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
Col11a1Q61245 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
Col11a1Q61245 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC31.63■■■□□ 2.65
Col11a1Q61245 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC31.6■■■□□ 2.65
Col11a1Q61245 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC31.59■■■□□ 2.65
Col11a1Q61245 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC31.57■■■□□ 2.64
Col11a1Q61245 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
Col11a1Q61245 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
Col11a1Q61245 Tdp2-203ENSMUST00000223804 1136 ntBASIC31.54■■■□□ 2.64
Col11a1Q61245 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC31.51■■■□□ 2.63
Col11a1Q61245 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC31.48■■■□□ 2.63
Col11a1Q61245 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC31.48■■■□□ 2.63
Col11a1Q61245 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC31.47■■■□□ 2.63
Col11a1Q61245 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC31.47■■■□□ 2.63
Col11a1Q61245 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC31.45■■■□□ 2.62
Col11a1Q61245 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
Col11a1Q61245 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC31.42■■■□□ 2.62
Col11a1Q61245 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC31.42■■■□□ 2.62
Col11a1Q61245 Peli2-204ENSMUST00000226513 1320 ntBASIC31.41■■■□□ 2.62
Col11a1Q61245 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
Col11a1Q61245 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC31.39■■■□□ 2.62
Col11a1Q61245 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Col11a1Q61245 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC31.38■■■□□ 2.61
Col11a1Q61245 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
Col11a1Q61245 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC31.36■■■□□ 2.61
Col11a1Q61245 Zfp131-207ENSMUST00000224946 1783 ntBASIC31.36■■■□□ 2.61
Col11a1Q61245 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC31.33■■■□□ 2.61
Col11a1Q61245 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Col11a1Q61245 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC31.27■■■□□ 2.6
Col11a1Q61245 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
Col11a1Q61245 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC31.26■■■□□ 2.6
Col11a1Q61245 Gm45855-201ENSMUST00000212546 880 ntBASIC31.25■■■□□ 2.59
Col11a1Q61245 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
Retrieved 100 of 76,532 protein–RNA pairs in 55.4 ms