Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC25.95■■□□□ 1.75
Nr1h4Q60641 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC25.89■■□□□ 1.74
Nr1h4Q60641 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC25.87■■□□□ 1.73
Nr1h4Q60641 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Nr1h4Q60641 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Nr1h4Q60641 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC25.8■■□□□ 1.72
Nr1h4Q60641 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
Nr1h4Q60641 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Nr1h4Q60641 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Nr1h4Q60641 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Nr1h4Q60641 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Nr1h4Q60641 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
Nr1h4Q60641 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC25.67■■□□□ 1.7
Nr1h4Q60641 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC25.67■■□□□ 1.7
Nr1h4Q60641 Gm25238-201ENSMUST00000174914 89 ntBASIC25.66■■□□□ 1.7
Nr1h4Q60641 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
Nr1h4Q60641 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC25.64■■□□□ 1.69
Nr1h4Q60641 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
Nr1h4Q60641 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC25.62■■□□□ 1.69
Nr1h4Q60641 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Nr1h4Q60641 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC25.61■■□□□ 1.69
Nr1h4Q60641 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC25.61■■□□□ 1.69
Nr1h4Q60641 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Nr1h4Q60641 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Nr1h4Q60641 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC25.52■■□□□ 1.68
Nr1h4Q60641 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Nr1h4Q60641 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC25.49■■□□□ 1.67
Nr1h4Q60641 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC25.48■■□□□ 1.67
Nr1h4Q60641 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC25.46■■□□□ 1.67
Nr1h4Q60641 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Nr1h4Q60641 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC25.42■■□□□ 1.66
Nr1h4Q60641 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC25.41■■□□□ 1.66
Nr1h4Q60641 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC25.4■■□□□ 1.66
Nr1h4Q60641 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Nr1h4Q60641 Zfp131-207ENSMUST00000224946 1783 ntBASIC25.34■■□□□ 1.65
Nr1h4Q60641 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Nr1h4Q60641 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
Nr1h4Q60641 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Nr1h4Q60641 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Nr1h4Q60641 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC25.3■■□□□ 1.64
Nr1h4Q60641 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC25.27■■□□□ 1.64
Nr1h4Q60641 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Nr1h4Q60641 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC25.2■■□□□ 1.63
Nr1h4Q60641 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Nr1h4Q60641 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC25.16■■□□□ 1.62
Nr1h4Q60641 Gm2415-204ENSMUST00000190235 2004 ntBASIC25.15■■□□□ 1.62
Nr1h4Q60641 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Nr1h4Q60641 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC25.13■■□□□ 1.61
Nr1h4Q60641 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
Nr1h4Q60641 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Nr1h4Q60641 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
Nr1h4Q60641 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Nr1h4Q60641 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Nr1h4Q60641 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
Nr1h4Q60641 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Nr1h4Q60641 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Nr1h4Q60641 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC25.09■■□□□ 1.61
Nr1h4Q60641 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Nr1h4Q60641 Rab21-202ENSMUST00000218831 843 ntBASIC25.08■■□□□ 1.61
Nr1h4Q60641 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC25.07■■□□□ 1.6
Nr1h4Q60641 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
Nr1h4Q60641 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
Nr1h4Q60641 Gm6658-202ENSMUST00000209493 1885 ntBASIC25■■□□□ 1.59
Nr1h4Q60641 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
Nr1h4Q60641 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
Nr1h4Q60641 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC24.98■■□□□ 1.59
Nr1h4Q60641 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC24.97■■□□□ 1.59
Nr1h4Q60641 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
Nr1h4Q60641 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC24.93■■□□□ 1.58
Nr1h4Q60641 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
Nr1h4Q60641 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC24.88■■□□□ 1.57
Nr1h4Q60641 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC24.88■■□□□ 1.57
Nr1h4Q60641 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Nr1h4Q60641 AC153504.1-201ENSMUST00000218379 2290 ntBASIC24.87■■□□□ 1.57
Nr1h4Q60641 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Nr1h4Q60641 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Nr1h4Q60641 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC24.85■■□□□ 1.57
Nr1h4Q60641 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC24.85■■□□□ 1.57
Nr1h4Q60641 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
Nr1h4Q60641 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
Nr1h4Q60641 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
Nr1h4Q60641 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
Nr1h4Q60641 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
Nr1h4Q60641 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Nr1h4Q60641 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
Nr1h4Q60641 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Nr1h4Q60641 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
Nr1h4Q60641 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC24.72■■□□□ 1.55
Nr1h4Q60641 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
Nr1h4Q60641 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
Nr1h4Q60641 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC24.69■■□□□ 1.54
Nr1h4Q60641 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC24.68■■□□□ 1.54
Nr1h4Q60641 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC24.68■■□□□ 1.54
Nr1h4Q60641 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
Nr1h4Q60641 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Nr1h4Q60641 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
Nr1h4Q60641 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
Nr1h4Q60641 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Nr1h4Q60641 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC24.65■■□□□ 1.54
Nr1h4Q60641 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC24.62■■□□□ 1.53
Retrieved 100 of 76,532 protein–RNA pairs in 136.9 ms