Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC30.38■■■□□ 2.45
Hmgb1P63158 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Hmgb1P63158 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC30.36■■■□□ 2.45
Hmgb1P63158 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC30.29■■■□□ 2.44
Hmgb1P63158 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Hmgb1P63158 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC30.16■■■□□ 2.42
Hmgb1P63158 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC30.09■■■□□ 2.41
Hmgb1P63158 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC30.07■■■□□ 2.4
Hmgb1P63158 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC30.06■■■□□ 2.4
Hmgb1P63158 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Hmgb1P63158 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
Hmgb1P63158 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC30.03■■■□□ 2.4
Hmgb1P63158 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC30.01■■■□□ 2.39
Hmgb1P63158 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
Hmgb1P63158 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC29.95■■■□□ 2.38
Hmgb1P63158 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC29.93■■■□□ 2.38
Hmgb1P63158 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
Hmgb1P63158 Rab21-202ENSMUST00000218831 843 ntBASIC29.89■■■□□ 2.38
Hmgb1P63158 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC29.84■■■□□ 2.37
Hmgb1P63158 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
Hmgb1P63158 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
Hmgb1P63158 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
Hmgb1P63158 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
Hmgb1P63158 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC29.8■■■□□ 2.36
Hmgb1P63158 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
Hmgb1P63158 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
Hmgb1P63158 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC29.75■■■□□ 2.35
Hmgb1P63158 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
Hmgb1P63158 Zfp131-207ENSMUST00000224946 1783 ntBASIC29.71■■■□□ 2.35
Hmgb1P63158 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
Hmgb1P63158 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
Hmgb1P63158 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC29.69■■■□□ 2.34
Hmgb1P63158 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC29.67■■■□□ 2.34
Hmgb1P63158 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC29.63■■■□□ 2.33
Hmgb1P63158 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC29.63■■■□□ 2.33
Hmgb1P63158 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC29.61■■■□□ 2.33
Hmgb1P63158 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC29.6■■■□□ 2.33
Hmgb1P63158 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC29.6■■■□□ 2.33
Hmgb1P63158 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC29.59■■■□□ 2.33
Hmgb1P63158 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
Hmgb1P63158 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
Hmgb1P63158 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
Hmgb1P63158 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
Hmgb1P63158 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
Hmgb1P63158 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC29.5■■■□□ 2.31
Hmgb1P63158 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC29.45■■■□□ 2.31
Hmgb1P63158 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
Hmgb1P63158 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC29.44■■■□□ 2.3
Hmgb1P63158 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
Hmgb1P63158 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC29.42■■■□□ 2.3
Hmgb1P63158 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC29.39■■■□□ 2.3
Hmgb1P63158 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
Hmgb1P63158 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
Hmgb1P63158 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
Hmgb1P63158 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC29.37■■■□□ 2.29
Hmgb1P63158 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC29.31■■■□□ 2.28
Hmgb1P63158 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
Hmgb1P63158 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
Hmgb1P63158 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC29.29■■■□□ 2.28
Hmgb1P63158 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
Hmgb1P63158 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
Hmgb1P63158 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
Hmgb1P63158 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
Hmgb1P63158 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC29.2■■■□□ 2.26
Hmgb1P63158 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC29.19■■■□□ 2.26
Hmgb1P63158 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
Hmgb1P63158 Gm2415-204ENSMUST00000190235 2004 ntBASIC29.18■■■□□ 2.26
Hmgb1P63158 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
Hmgb1P63158 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC29.16■■■□□ 2.26
Hmgb1P63158 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC29.16■■■□□ 2.26
Hmgb1P63158 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC29.14■■■□□ 2.26
Hmgb1P63158 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC29.13■■■□□ 2.25
Hmgb1P63158 Gm25262-201ENSMUST00000174934 133 ntBASIC29.12■■■□□ 2.25
Hmgb1P63158 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC29.08■■■□□ 2.25
Hmgb1P63158 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
Hmgb1P63158 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
Hmgb1P63158 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC29.01■■■□□ 2.23
Hmgb1P63158 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC28.99■■■□□ 2.23
Hmgb1P63158 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC28.99■■■□□ 2.23
Hmgb1P63158 Gm6658-202ENSMUST00000209493 1885 ntBASIC28.98■■■□□ 2.23
Hmgb1P63158 AL845457.1-201ENSMUST00000197244 68 ntBASIC28.98■■■□□ 2.23
Hmgb1P63158 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
Hmgb1P63158 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC28.96■■■□□ 2.23
Hmgb1P63158 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
Hmgb1P63158 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
Hmgb1P63158 Mipep-204ENSMUST00000225043 1548 ntBASIC28.85■■■□□ 2.21
Hmgb1P63158 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
Hmgb1P63158 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
Hmgb1P63158 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
Hmgb1P63158 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
Hmgb1P63158 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC28.79■■■□□ 2.2
Hmgb1P63158 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC28.79■■■□□ 2.2
Hmgb1P63158 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC28.75■■■□□ 2.19
Hmgb1P63158 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC28.73■■■□□ 2.19
Hmgb1P63158 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC28.73■■■□□ 2.19
Hmgb1P63158 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
Hmgb1P63158 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
Hmgb1P63158 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
Hmgb1P63158 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC28.69■■■□□ 2.18
Hmgb1P63158 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
Retrieved 100 of 76,532 protein–RNA pairs in 8.1 ms